Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq282 125 7e-24 seq275 100 3e-16 seq243 95.1 1e-14 seq230 87.8 2e-12 seq285 82.4 8e-11 >seq282 Length=398316 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | ||| || ||||||| || ||||||||||||||||| || |||| Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| || || || |||||| |||| | || || || || |||||| Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| ||||| || || ||| || ||| | ||| || ||| ||||| Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACC 140501 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || || || |||||||| Sbjct 140502 TCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| ||||||||||| | ||| || | ||||| || |||||||| Sbjct 140580 GTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCA 140639 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||| || || ||||| || || || ||||| ||||| ||| Sbjct 140640 GCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTG 140699 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || ||| || || || | || | |||||||||||| | ||| Sbjct 140700 ACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTC 140759 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || ||||||||||| Sbjct 140760 TTGACAAAGATTTGCATTTT 140779 >seq275 Length=453286 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | || | |||| || ||||| || || || ||||| || | | Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || | |||||||| ||| | || | || |||||||| || ||| Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| ||| || | |||||| | || || Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACC 384704 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| || || |||||||||||||| || |||||| Sbjct 384705 TCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 >seq243 Length=773012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||||||||| || | ||||| | || || || || || ||||| ||| Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | || |||||||| ||||||||||| || || || || || || ||| ||| | Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| | || || || | || | |||||| || ||||||||||| |||| Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 551992 AAATCTGCAT 551983 >seq230 Length=975444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 132822 TTGTAATACAAACACGCAAAGTTTGTATGCAAACCTTCGTCTCTTGATATAAGCTCGTTG 132881 ||||| ||| || ||||||| |||||||||||||||||||| || || | |||||| Sbjct 390087 TTGTACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTG 390028 Query 132882 CTGAACGTGAGGCCGGGCATGATGCCTTTTGTTTTAATAAAAAATATTGCCGCAAAACTG 132941 ||||| || | |||||||| | ||| | || | | || || || ||||| || Sbjct 390027 CTGAAAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTT 389968 Query 132942 CCCGAAAAGAACACGCCTTCTACAATTGCAAAAGCCACCATTC 132984 || |||||||| | ||||| || || ||||| || |||| Sbjct 389967 CCGGAAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTC 389925 >seq285 Length=381527 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | |||||||| ||| | || | || ||||| || ||||||||||| || || Sbjct 34473 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTG 34414 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| || | || ||| || ||||| || | || | | Sbjct 34413 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATG 34354 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||| || | ||||| |||||||| |||||||| Sbjct 34353 GTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTT 34316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499615908039440