Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq318 113 4e-20 >seq318 Length=230163 Score = 113 bits (124), Expect = 4e-20 Identities = 290/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 ||||| |||| | || || ||||||||||| | | |||| | || || || || Sbjct 42358 TTCGCCATCTACTTGGAACCGTGGCACGCGGATATCTTCGATTTCTTGGATCTCCGCAAA 42417 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 |||||||| || || ||||||| | |||||||||| | |||||| | || ||| Sbjct 42418 AACCACGGAAAGGAGGAACAGAGGGCTCGTGACCTCTTCTTTGGGCTCTGGATTCCCGAC 42477 Query 94300 CTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGT 94359 | || |||||||||||| || || | ||||| || | |||||| |||| ||| Sbjct 42478 TTATTCATGAAACGCGTCAAGGAATTCGGAATGTGGAGCCTCATGTGTCCCCATGAGTGT 42537 Query 94360 CCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGA-AGACTTGTATGCTCGTTACGAATC 94418 || ||| || ||||| || || ||||| ||| ||||| | ||||| | Sbjct 42538 CCGGGATTGGCCGACTGCTGGGGCGAAGACTTTGAGAGA-TTGTACGAGAAATACGAGGC 42596 Query 94419 GCAGGGCAAGGCCAGGAAG---GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGA 94475 | ||||| | | ||| || | || | | || || | |||| | ||| | || Sbjct 42597 TGAAGGCAAATTCCGCAAGCAAGTCAAGGCT-CAAG--AGGTTTGGGCTGCCATCATTGA 42653 Query 94476 CGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTC 94535 ||| | ||||| ||||| || || || | | ||||||| || |||| |||||| Sbjct 42654 GTCGCAGATTGAGACTGGTACTCCTTATATGCTCTACAAGGACGCTTGCAACCGCAAGTC 42713 Query 94536 CAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTA 94595 |||||||||| | | || || ||| |||| || || ||||| ||||| || ||||| Sbjct 42714 CAACCAGCAGAATTTGGGCACCATTAAGTGCTCAAACCTCTGCACGGAGATCGTAGAGTA 42773 Query 94596 TACTTCTCCGGACGAG 94611 || || || || ||| Sbjct 42774 TAGCTCGCCTGATGAG 42789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494694592630960