Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq230 141 9e-29 seq282 104 2e-17 seq243 100 3e-16 seq275 95.1 1e-14 >seq230 Length=975444 Score = 141 bits (156), Expect = 9e-29 Identities = 346/517 (67%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 ||||| ||||| || ||||| | ||||| |||| |||||| | || | ||| Sbjct 389852 GTGCCTGCCGTTCAGAAGAAGGCCAAATGGGCGTTGAACTGGATCAATGCGGATAACGCT 389911 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 | || || | || || || ||||| |||||| || | || |||||||| ||| Sbjct 389912 TCCTATGCAGAAAGAATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGC 389971 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 ||||||||||| || | | || | | ||| | |||||||| |||| ||||||||| Sbjct 389972 TTTGCCGCCATTTTCTGGCTGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAAC 390031 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 || ||||| || | |||||||| |||| ||||||||||| ||| | ||||| | Sbjct 390032 GAATTGATCTCCAGAGACGAAGGTTTGCATACGGACTTTGCATGCTTGATGTACAA---G 390088 Query 52566 CGCGTGACCGAAAAATTGGATTCG--GACACGATCCTGAGCATGTTCAAGGAGGCGGTGG 52623 | | || | | || ||| | || | | ||| || || | || || |||| Sbjct 390089 CACTTGGTCAACAAGTTG--TCCGAAAAGAGGATTTTGCAAATCGTTTGCGAAGCCGTGG 390146 Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCC-GGTCGAGCTGCTGGGCATGAACGCG 52682 ||| |||| ||||| | || | || | || ||||| || | |||||||| | Sbjct 390147 ATATTGAAATTGAGTTCCTGACTGAAGCCTTACCTTGTCGA-CTCATTGGCATGAATGGC 390205 Query 52683 CAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG--GC 52740 | | ||| |||||||| ||| ||| || || || || | | ||||||| || Sbjct 390206 GACTTGATGGCTCAGTACATCAAGTATGTCGCTGACCGATTGCTTCTTGAGCTCGGATGC 390265 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | | ||| | ||||| | ||||| ||||| || ||| | |||||||| ||||| | Sbjct 390266 AAC--AAGGTGTACAACGTTGAAAATCCTTTTGACTTCATGGAGAACATTTCTCTTGATG 390323 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| ||||||||||| ||||| || || || || || Sbjct 390324 GCAAAACCAACTTTTTTGAGAAACGCGTTGGTGAATA 390360 >seq282 Length=398316 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | ||||||||||| |||||||| |||||| Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | | |||| | ||| || || || || || Sbjct 140610 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 140669 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | ||| | |||||||| | ||| ||| Sbjct 140670 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACC 140729 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || ||||| || ||||| || ||||| Sbjct 140730 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || | ||| | |||| || ||||||||||| ||||| | Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||||||||| |||| | | || | ||| ||||| || ||||| Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | ||||||| | |||||| Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACC 140501 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || |||||||| || || ||||| || ||||| Sbjct 140502 TCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq243 Length=773012 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 ||||||||||||||||| |||| ||| || |||||||||||||| |||| | || Sbjct 552170 TTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAATC 552111 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCC 138546 | | || ||||| ||||| || || || || || ||| || || | | ||| Sbjct 552110 AACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCG 552051 Query 138547 ACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | || |||| | ||| ||||||| || | || ||||| |||| |||||| || ||| Sbjct 552050 ATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGAAA 551991 Query 138607 ATCTGCATGG 138616 |||||||||| Sbjct 551990 ATCTGCATGG 551981 >seq275 Length=453286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || || || | | |||||||| || ||||||||||| Sbjct 384296 GCCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 384355 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||||| ||||| | ||| || || | |||| | ||| || || || || || Sbjct 384356 GAGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 384415 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | ||| | ||| |||| || ||| || Sbjct 384416 AATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAAC 384475 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | ||| |||||||||| ||| || || || || |||||| || Sbjct 384476 CTCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATGCCT 384527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496233703626720