Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq282 111 1e-19 seq275 104 2e-17 >seq282 Length=398316 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | ||||| || ||||| |||||||||||||| || | | | ||||| Sbjct 140567 AACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTC 140626 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | |||||||| || || || ||||| || |||||||| Sbjct 140627 CAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 140686 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || || |||| || || ||| || || || | ||||||||| || Sbjct 140687 GATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTT 140746 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || ||||| || ||||| |||||||| ||| Sbjct 140747 GCCGGTGAGAGTCTTGACAAAGATTTGCATTTTT 140780 >seq275 Length=453286 Score = 104 bits (114), Expect = 2e-17 Identities = 172/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || | |||||| || || || ||||||||||| || || || || ||||| || Sbjct 384523 TGCCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAG 384582 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || ||||| |||||||| | |||||||| || ||||| | Sbjct 384583 AGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGG 384642 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| || || || ||| |||| || ||||| | || | Sbjct 384643 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAA 384702 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTGAAA-- 15184 | || | ||| ||||| || || || | ||||||||| || || |||| | | ||||| Sbjct 384703 CCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATTGTCTGAAATG 384762 Query 15185 TAAATT 15190 |||||| Sbjct 384763 TAAATT 384768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357371850462410