Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq282 143 3e-29 seq230 127 2e-24 seq243 116 4e-21 seq275 109 5e-19 seq285 96.9 3e-15 >seq282 Length=398316 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | |||||||| ||||| || |||||||||| | Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || ||||| ||||||| || |||||||| || || Sbjct 140610 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 140669 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| ||||| | ||||| |||||| | ||| || Sbjct 140670 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACC 140729 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||| ||||| || ||||| || ||||| Sbjct 140730 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || || | || | ||| | || || ||||||||||| || || || Sbjct 140321 TCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 140380 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || || |||||||| || | ||||| || || ||||| ||||| Sbjct 140381 CAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGG 140440 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| ||||| ||| || ||| | | || | ||||| | || || Sbjct 140441 AATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCAC 140500 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| ||||| ||||| || || ||||| || ||||| Sbjct 140501 CTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq230 Length=975444 Score = 127 bits (140), Expect = 2e-24 Identities = 298/441 (68%), Gaps = 19/441 (4%) Strand=Plus/Plus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACA 47205 |||||||||| ||||| || | ||||| || || |||||||| || || || | Sbjct 389931 TCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCATTTTCTGGC 389990 Query 47206 TGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACG 47265 |||| | |||| | |||||||| | || || |||||||| | ||||| ||||||| Sbjct 389991 TGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAACGAATTGATCTCCAGAGACG 390050 Query 47266 AAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA-CACTAGAGTCGATCAAAAGTTG 47324 |||| |||| || ||||||| || | ||||| |||| | ||| | |||||| Sbjct 390051 AAGGTTTGCATACGGACTTTGCATGCTTGATGTACAAGCACTTG-GTCAAC---AAGTTG 390106 Query 47325 GACGTGCCCACCGTCAGCGACAT-GTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTT 47383 || | | | || |||||| |||||||| | ||||| || ||||| | Sbjct 390107 TCCGAAAAGAGGATTTTGCAAATCGTTTGC-GAAGCCGTGGATATTGAAATTGAGTTCCT 390165 Query 47384 CGCCGAGGCTCTGCC----CGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGT 47439 | || || | || ||| || || || ||||| | || ||||| ||| Sbjct 390166 GACTGAAGCCTTACCTTGTCGACTCATT----GGCATGAATGGCGACTTGATGGCTCAGT 390221 Query 47440 ACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCC--CAAGATTTACCA 47497 ||||| | | |||||| ||||| |||| || |||| | || | |||| | ||| | Sbjct 390222 ACATCAAGTATGTCGCTGACCGATTGCTTCTTGAGCTC--GGATGCAACAAGGTGTACAA 390279 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | || ||||| || || || ||| | |||||||| || || ||||| ||||||||||| Sbjct 390280 CGTTGAAAATCCTTTTGACTTCATGGAGAACATTTCTCTTGATGGCAAAACCAACTTTTT 390339 Query 47558 CGAGAAGCGCGTCGGCGAATA 47578 ||||| ||||| || ||||| Sbjct 390340 TGAGAAACGCGTTGGTGAATA 390360 >seq243 Length=773012 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||||||||| ||||| || | || ||||| ||| || || |||||||| ||| | | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| | ||||| || ||||| || |||||||| ||| ||| || ||||| | || Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| || || | | ||| || |||| ||| | || || || |||| |||||| || | Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 127104 AAATCTGCATGG 127115 |||||||||||| Sbjct 551992 AAATCTGCATGG 551981 >seq275 Length=453286 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| ||| ||||| || | ||||| || || || |||||||| || | ||||| Sbjct 384534 AATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGG 384593 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | || || ||||| ||||||| || ||||| || || || ||||||||| Sbjct 384594 CCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCC 384653 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 ||||| ||| || ||||| | ||||| ||| || | | ||| || |||| ||| Sbjct 384654 TTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTG 384713 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || | ||||||||| || |||||||| Sbjct 384714 ATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | |||||||| || || || ||||| || Sbjct 384297 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 384356 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || || |||||| ||||||| || |||||||| || || Sbjct 384357 AGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 384416 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||||| | ||| | ||| || | ||| || Sbjct 384417 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACC 384476 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | ||| || || |||| ||| || || || || |||||| || Sbjct 384477 TCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATGCCT 384527 >seq285 Length=381527 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || ||||| ||||||| || |||||||| ||||| || ||||||||||| ||| Sbjct 34464 TGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATC 34405 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||||| | ||| | |||||| | ||| || |||| ||| | |||||||| Sbjct 34404 TTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATGGTTTTGCCC 34345 Query 127088 GTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| || ||||||||||| Sbjct 34344 GTGAGGGTTTTGACGAAAATCTGCAT 34319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475473304166240