Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq282 136 4e-27 seq275 113 4e-20 seq230 102 7e-17 >seq282 Length=398316 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || | ||||| || || ||||||||||| || |||||| Sbjct 140547 ATACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCG 140606 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| ||| |||| ||| || || || | ||||| |||||||| || || Sbjct 140607 CTCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGG 140666 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || ||||| ||||| |||| ||| | ||||||||| | ||| Sbjct 140667 GGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCA 140726 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || |||||||| ||||| || ||||| |||||||| Sbjct 140727 ACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 >seq275 Length=453286 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || |||||||| |||||||| || || || ||| | Sbjct 384537 CTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCA 384596 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||| ||||||||||| || |||||||| || || Sbjct 384597 TCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTTG 384656 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || |||| ||| | ||| || |||| ||| || ||||| || | Sbjct 384657 TCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATG 384716 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||||||| || || ||||| Sbjct 384717 GTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 >seq230 Length=975444 Score = 102 bits (112), Expect = 7e-17 Identities = 295/448 (66%), Gaps = 17/448 (4%) Strand=Plus/Minus Query 138086 GTATTCTCCTACGCGCCGCTCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCAT 138145 |||||| || ||||| ||||||||| || ||||| || || | || ||||| ||| Sbjct 390361 GTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCTCCAT 390302 Query 138146 AAAATTAAAAGGATTACTCGCCATAAAATGCTTTGGCTGATTA-AGATCGACAAGCAAAC 138204 || | ||||||||| || | | | | ||| || || || | |||||| | Sbjct 390301 GAAGTCAAAAGGATTT-TCAACGTTGTACACCTTGTTGCATCCGAGCTCAAGAAGCAATC 390243 Query 138205 GATCGGCTACAAATTCAATGTATCGACACATCGATTCGGTGTTCATGCCCAACAAACTGC 138264 | || || ||| | | ||||| || |||| | ||| |||||||| | | | | Sbjct 390242 GGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAGTCGAC 390183 Query 138265 AAGGCAACGCCGTTTTAAAAAATTCCTTTTCAATTTCTACCGCTTCGATAAACATGTCCA 138324 |||| || || | | || || ||||||| || || |||||| || || | || Sbjct 390182 AAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGATTTGCA 390123 Query 138325 ATATTCG---TTCGGACGACAGTTTGTCGTGTTCGGGAATGTACTCATTGTAATACAAGC 138381 | || | ||||||| || |||| || | | || || |||| ||||| Sbjct 390122 AAATCCTCTTTTCGGACAAC---TTGT--TGACC----AAGTGCT---TGTACATCAAGC 390075 Query 138382 ACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAGCC 138441 | ||||||| || || ||||||||||| | ||||| | ||||||||| || |||| | Sbjct 390074 ATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATC 390015 Query 138442 CCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaaaa 138501 | ||||| | ||| |||| | | || ||||| || || || || ||||| |||| Sbjct 390014 CGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAA 389955 Query 138502 CGCCTTCGACAATAGCGAAAGCCACCAT 138529 |||||||| ||||||||| || || Sbjct 389954 TTCCTTCGACTGAAGCGAAAGCGACAAT 389927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451977062914960