Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq318 111 2e-19 >seq318 Length=230163 Score = 111 bits (122), Expect = 2e-19 Identities = 278/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 ||||||| || ||||| || | ||||| | ||||||||||||||| |||| || || Sbjct 42773 TACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTG 42714 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||||| ||| || || ||||||||||||||||| || || || ||||| | || ||| Sbjct 42713 GACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGAC 42654 Query 116596 TTGAGAATAGCCTTCCATACATCGGCGGC--TGGCACAGTGGCGTTGGCTCGCCCCTCCT 116653 | | || || ||| || || || || | | ||| | | || || Sbjct 42653 TCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCG--GAATTTGCCTTCAG 42596 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGT 116712 ||||||| || ||| | |||||| ||||| ||| |||| || | | || || Sbjct 42595 CCTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCC-CAGCAGTCGGCCAATCCCGGA 42537 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 || || ||||| | ||| ||| || |||| || || |||||||| | | Sbjct 42536 CACTCATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAG 42477 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || || ||||||||| | ||||||| || ||| | ||| || | || || || Sbjct 42476 TCGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTT 42417 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 || | ||||| || || | ||||||||||||||||||||||| ||| | |||| Sbjct 42416 TTGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGA 42359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613471723946160