Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq318 131 3e-25 >seq318 Length=230163 Score = 131 bits (144), Expect = 3e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 203834 TTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTAC 203893 || |||||||| || ||||||||||| || | || | | || | |||| |||||| Sbjct 44468 TTGGTCTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTAC 44409 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 || || ||||| ||||| ||||| ||||| | |||||| || ||||| ||| | Sbjct 44408 ATTCCCGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAA 44349 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 ||||||||||| ||||| | ||||| |||||||| |||||||| |||||| || || || Sbjct 44348 TTGGGGTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGAT-AAAGGCTCCGCGGTC 44290 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 || | ||| |||| | ||| || || |||||||| || || ||| Sbjct 44289 AGCCGACATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTG 44241 Score = 105 bits (116), Expect = 1e-17 Identities = 293/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||| ||||| | ||| |||||| | |||| || ||||||||| || Sbjct 42771 CTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTGGA 42712 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| || | ||||||||| | ||| | || | || |||| ||||| || Sbjct 42711 CTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGA--- 42655 Query 205003 CAGAATG-TGG--GTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGA 205059 | |||| ||| | ||| | || |||||| |||||||| | | | |||| || Sbjct 42654 CTCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCGGAATTTGCCTTCAGC 42595 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 ||||||||| ||||| | ||||||| || | ||| || || ||||| Sbjct 42594 CTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACA 42535 Query 205120 TTTTTTGGGACACATCAGAGACCACA-TCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | | ||||||||| || ||||| || || || || || | | ||| || | || Sbjct 42534 CTCATGGGGACACATGAGGCTCCACATTCCGA-ATTCCTTGACGCGTTTCATGAATAAGT 42476 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||| || || | || || ||||| ||||| | | || | ||| |||| | Sbjct 42475 CGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTT 42416 Query 205239 TTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 | | |||| || | || || ||||||||||| || || | | ||| | | Sbjct 42415 TGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGG 42356 Query 205299 CGCCTGGCCTCTTGTTCCCACCCT 205322 | |||||||| ||||| || |||| Sbjct 42355 CTCCTGGCCTTTTGTTGCCTCCCT 42332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795109220150560