Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq282 105 2e-17 seq275 100 7e-16 seq243 100 7e-16 >seq282 Length=398316 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| |||||| || || || | |||||||||||| ||||| || Sbjct 140580 GTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCA 140639 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||| ||||| || || ||| || || || || || || ||| Sbjct 140640 GCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTG 140699 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||||| |||||| | | || || || | || || ||||| || |||||||| Sbjct 140700 ACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTC 140759 Query 199613 TTCACAAAAATTTGGTACATTTTAGCCTTACTTTA 199647 || ||||| |||| | | ||||||| || |||| Sbjct 140760 TTGACAAAGATTT-GCATTTTTTAGCTTTGATTTA 140793 >seq275 Length=453286 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| |||||||| |||| ||||||||| | | ||| Sbjct 384303 CGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTA 384362 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||||| || |||||||| | ||| ||||| || || ||| || Sbjct 384363 CGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCC 384422 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||| | ||| || | | || || || | Sbjct 384423 TCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGG 384482 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || | ||| || || || ||||| Sbjct 384483 GTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTG 384520 >seq243 Length=773012 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | |||||||||| |||||| | ||||| || || || ||||||||||| || Sbjct 552170 TTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAATC 552111 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 | | |||||||| ||| |||||| || ||||| ||||| ||| || |||| Sbjct 552110 AACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCG 552051 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | || || | | ||||| || | || || ||||||||||| | |||||| || ||| Sbjct 552050 ATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGAAA 551991 Query 199622 ATTTG 199626 || || Sbjct 551990 ATCTG 551986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178851724579942