Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq275 120 3e-22 seq282 113 5e-20 seq311 93.3 5e-14 >seq275 Length=453286 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| ||| || | | ||||||||||| || | ||| |||||| ||||| ||||| Sbjct 384290 TTATTGGCCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTA 384349 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||| ||| | || || | |||||||| ||||| ||||| || ||||| || Sbjct 384350 GTCTGAGAGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATC 384409 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||||| | | | || ||| || Sbjct 384410 TGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGG 384469 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | ||||| || || || |||| || ||||| ||||||||||| Sbjct 384470 CTCAACCTCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || || | ||| |||| || | ||| ||||| |||||||||||||| | Sbjct 384523 TGCCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAG 384582 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || | |||||||| || || ||||| || |||||||| | | Sbjct 384583 AGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGG 384642 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| | | | || || | || | Sbjct 384643 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAA 384702 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | |||||||| || || || | ||||| || ||||| |||||| Sbjct 384703 CCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 >seq282 Length=398316 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||||||| |||||||||||| ||||| ||| || || || | || || Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||| || || ||||| || ||||| || | || | || ||||||||| | Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | |||||| | || || || | || ||||| ||| Sbjct 140688 ATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTG 140747 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || || || ||||||||||||||||| Sbjct 140748 CCGGTGAGAGTCTTGACAAAGATTTGCATTTT 140779 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||| | || ||||| | || || ||||| || || ||||| || Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || ||||| || || ||||| || ||||| || || || || | || Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| |||||| ||| | || | | |||||| | |||||| Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACC 140501 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||| ||||| || || |||||||||||||| Sbjct 140502 TCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq311 Length=259814 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| ||||| | |||| ||| || || ||||| ||||||||||||||||| Sbjct 106093 CCTCCTCGCAAACGTAGAACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGAG 106152 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || | ||||||||||| || ||||| || ||||| || | || Sbjct 106153 AGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 106212 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | |||||||| |||||| ||||| Sbjct 106213 ATACCTTCCTTGTCTTGGATCTTAGCCTTGA 106243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565205715089520