Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq230 156 4e-33 seq282 150 2e-31 seq275 116 4e-21 seq285 98.7 1e-15 seq243 87.8 2e-12 >seq230 Length=975444 Score = 156 bits (172), Expect = 4e-33 Identities = 361/537 (67%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| ||||| || || |||||||||||| || ||||| || || | |||||| | Sbjct 390366 TTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTC 390307 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC--AGGTCGACGA 132721 ||| || || || || || | |||||| |||| ||| ||| || || | | Sbjct 390306 TCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGC--ATCCGAGCTCAAGAA 390249 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA 132781 ||| | ||| || || ||| |||||| || | ||| |||| ||| | || | | Sbjct 390248 GCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGA 390189 Query 132782 GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 | || || | ||||| || || || || || | || || ||| |||| Sbjct 390188 GTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGA 390129 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCC-GTTGCACCAAATGCTTGAACATCAAGCAAGCA 132900 ||| | || | | || | | |||| ||||| |||||| |||||||||| ||| Sbjct 390128 TTTGCAAAATCCTCTTTTCGGACAACTTGTTG-ACCAAGTGCTTGTACATCAAGCATGCA 390070 Query 132901 AAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 ||||| |||||| || ||||| ||||| || | |||||||||||||||||| |||||| Sbjct 390069 AAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGC 390010 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 || | || || || || ||||| || |||||||| || || || |||||||| | || Sbjct 390009 ATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTCCT 389950 Query 133021 TCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTTTGCTGGCGATCCA 133079 ||||| | |||||||| || | | || | | | || || | || |||||| Sbjct 389949 TCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCCGC-ATTGATCCA 389891 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 | || |||||||| |||||| | | ||| |||| ||||| || ||||| || Sbjct 389890 GTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTTGAA 389834 Score = 123 bits (136), Expect = 2e-23 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 ||| ||||| |||||||| | ||||| | || |||||||| ||| | || || Sbjct 389642 TTGGAAGCCATAAAAGCATCTGGCCTCAGGAATTTGAACTTCTTGCATGAACCTTTCAAC 389583 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 || || || ||||| ||||||||| |||||| || ||||| | |||||||||||||| Sbjct 389582 AAGGTTCTCATTGACAATGCCGTCGGAGGCGGCAAAGAAGGCTAAGACGTGCTTGATGAA 389523 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTC 133400 || |||| ||| ||||| |||| || | |||| |||||| ||| | || Sbjct 389522 GTGCTTTTCGTCGTCCTTCAACTTGGCCCAATCTGCCAAGTCCATGGACAAGTCAATTTC 389463 Query 133401 CTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTG 133460 |||| | ||||| || ||| |||||| |||||||| |||| || || ||||| Sbjct 389462 CTCGGCAGTCCAGAAGCTGGCCATGGCTTTCTTGTACATTTTCCAGATATCGTCATATTT 389403 Query 133461 TATGGGAAAAATCACAAA 133478 || || || |||||||| Sbjct 389402 GATAGGCAAGATCACAAA 389385 >seq282 Length=398316 Score = 150 bits (166), Expect = 2e-31 Identities = 168/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 38239 aaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 ||||||||||||| || || || || ||||| ||||| ||||| ||| |||| || |||| Sbjct 140781 AAAAAATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGG 140722 Query 38299 CCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 || |||||| | | | ||||| | || | ||||||| ||||| ||||| |||||| | Sbjct 140721 CCTCCGACACCATCGAAAACG-TCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCA 140663 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || || || | || | || ||||| || ||||| || | || ||||| | ||| Sbjct 140662 GATCAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGAT 140603 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||||||| | || |||||||||| || ||| Sbjct 140602 TACAACATCCAAAAGGAGTCTACATTGCATTTGGTTCTCCGT 140561 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || || ||| | || || || ||| || Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||||||||||||||| | || || Sbjct 140488 GACACAATTGAGAACG-TGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCA 140430 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| || || || | ||||| | ||||| || Sbjct 140429 ACAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAA 140370 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| ||| | || || ||| | || || ||||||||||| || Sbjct 140369 CATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGG 140322 >seq275 Length=453286 Score = 116 bits (128), Expect = 4e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| | | |||||| || ||||||||||| | || || || ||||||||| |||| || Sbjct 384760 TTTCAGACAATGCAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGAGGTT 384701 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 ||| | | || | | | ||| | || | || |||| ||||| ||||| |||||| Sbjct 384700 GAGCCTTCTGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCC 384641 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | ||||| || || | || | || ||||| || |||| || | ||||||||| Sbjct 384640 CCAGACCAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCTCTCT 384581 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| |||||| | || || || ||||| || | ||||| || ||| Sbjct 384580 GACTACAATATCCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGGGGAGGC 384524 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || |||||| | || || ||| | || Sbjct 384523 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCC 384464 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || |||| ||||| ||||| |||||| | || || Sbjct 384463 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 384404 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| ||||| || |||| || | ||| || ||| ||||||||| Sbjct 384403 CAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAAC 384344 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| ||||| | || || || |||||| ||||| | | || |||| Sbjct 384343 ATCCAGAAGGAGTCTACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGCC 384295 >seq285 Length=381527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| ||||||||||||||||||||| |||| || ||| || Sbjct 34316 AAAATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCC 34375 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | || |||| ||||| ||||||||||| | || Sbjct 34376 TCTGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGAT 34435 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 || || || | || | || ||||| || |||| || ||| Sbjct 34436 CAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGAGGAG 34477 >seq243 Length=773012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | ||||| || ||||| ||| |||| || ||| | || Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | || |||| || || ||||||||||| | ||||| Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || ||||| || || || | ||||| | | ||||||||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAAC 552162 Query 38424 ATCCAAAA 38431 || ||||| Sbjct 552163 ATTCAAAA 552170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500143877507840