Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq265 167 9e-36 seq339 118 4e-21 seq282 111 6e-19 seq243 100 1e-15 seq285 96.9 1e-14 seq260 93.3 2e-13 seq279 89.7 2e-12 >seq265 Length=512215 Score = 167 bits (184), Expect = 9e-36 Identities = 465/708 (66%), Gaps = 9/708 (1%) Strand=Plus/Plus Query 450904 CAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCA 450963 ||| || || || |||||||| ||||| |||||||||| ||||| || |||| ||| Sbjct 402653 CAAGAACGTCGCTATTGGAATCGATCTGGGAACCACCTACAGTTGTGTCGGAGTTTTCCA 402712 Query 450964 AAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGT 451023 | |||| || || ||| | | ||||| |||||||| || ||||| || |||| || Sbjct 402713 ACATGGCAAAGTGGAAGTCCTGGCAAACGACCAAGGTAATCGCACTACCCCATCATATGT 402772 Query 451024 AAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCA 451081 ||||| || | || | | | || | || || || | ||| ||| | Sbjct 402773 GGCCTTTACCGACACCGAGCGTTTGATCGGCGATGCCGCCAAGAACCAA--GTAGCTATG 402830 Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| | ||||| |||| ||||| || | || ||||| | | | ||| || || Sbjct 402831 AATCCGGTCAACACGGTATTCGATGCCAAGAGATTGATTGGAAGAAAATTTGAGGACGAA 402890 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAA---AGGAAAG 451198 || || ||| || | ||||| | ||| | || || || | |||||| Sbjct 402891 ACCGTTCAACGTGACATGAAATTGTGGCCTTTCAAGGTTGTCAAGGACTCCTCAGGAAAA 402950 Query 451199 CCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCA 451258 ||| | | |||| | | ||| | ||||| || | ||| | || || ||||| || Sbjct 402951 CCCAAATTGGAAGTTGAGTTCAAATGCGAAACCAAGAACTTTACCCCCGAGGAAATCTCT 403010 Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| | || |||||||| ||||| |||||| | |||| | | || | Sbjct 403011 TCAATGGTCTTGACCAAAATGAAGGAAACTGCAGAAGCTCACCTTGGACATACTGTCCGT 403070 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || | ||||||||||| || ||||| ||||| ||| | ||||| || || || Sbjct 403071 GATGCTGTCGTCACTGTTCCCGCCTACTTCAACGATGCCCAAAGACAAGCCACCAAGGAC 403130 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || ||||| ||| | ||||| ||| | || || || |||||||| || ||||| Sbjct 403131 GCCGGTGTCATTGCCGGTCTCAATGTCCTTAGGATCATCAACGAACCTACCGCTGCTGCC 403190 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAG-AAGaaaaaaaTATTTTAGTATTTGA 451497 | || ||||| || ||| || | ||| ||| |||| | ||| || | | ||||| Sbjct 403191 ATCGCCTATGG-CTTGGACAAGAAGAAGGGTCAGAAAGAGAGCAATGTTCTGATCTTTGA 403249 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 | | || ||||| || |||| ||| | || ||||| || || | || || || Sbjct 403250 TCTCGGAGGAGGCACATTTGATGTTTCCATCCTAAGCATTGACGAGGGAATCTTCGAGGT 403309 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| | || ||||| || ||| | ||||| |||||| |||| || Sbjct 403310 CAAGTCTACAGCAGGTGACACACATTTGGGAGGCGAAGATTTTGACAA 403357 >seq339 Length=181545 Score = 118 bits (130), Expect = 4e-21 Identities = 280/416 (67%), Gaps = 9/416 (2%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT 451255 |||||| | || ||||| | | ||| |||||| || || || |||| |||||| | Sbjct 139380 AAGCCCAAAATCCAAGTGGAGTTCAAATGTGAAAAGAAGACCTTCACTCCCGAAGAAGTC 139439 Query 451256 TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTT 451315 ||||| ||||| | || || ||||| || || || || ||||| | || | || Sbjct 139440 TCATCCATGGTCTTGACCAAGATGAAGGAGACTGCTGAGCAATACTTGGGCAAAACTGTC 139499 Query 451316 ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAA 451375 | ||||| || | ||||||||||| || || || || ||| | ||||| ||||| Sbjct 139500 AAGGATGCCGTCGTCACTGTTCCCGCCTACTTTAACGACAGTCAAAGACAAGCCACTAAG 139559 Query 451376 GATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCT 451435 || || || ||||||||| | || || ||| | || || || || || || || ||| Sbjct 139560 GACGCCGGTGTCATTGCTGGTCTCAACGTCCTTAGGATCATCAACGAGCCCACCGCTGCT 139619 Query 451436 GCTCTAGCATATGGACTAGGAAAATCAAAA--GAA--ACAGAAGaaaaaaaTATTTTAGT 451491 || | || ||||| || ||| || | || ||| | | ||| ||| |||| | Sbjct 139620 GCCATCGCCTATGG-CTTGGACAAGAAGAAGGGAACGTCTGCTGAAGCCAATGTTTTGAT 139678 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTA-CTT-TCAATTGAAGATGGGGTA 451549 ||||| || ||||| ||||| ||| || ||| ||| | |||||||| || | Sbjct 139679 CTTTGACTTGGGTGGCGGAACCTTCGAT--GTCAGTATCTTGACCATTGAAGACGGAATC 139736 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||||||| || | || ||| || || ||| | || ||||| ||| | ||||| Sbjct 139737 TTTGAAGTCAAATCCACTGCTGGAGACACCCATTTGGGTGGTGAGGATTTCGATAA 139792 >seq282 Length=398316 Score = 111 bits (122), Expect = 6e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || || ||||| | || || ||| | || Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || || || ||||| || || ||||||||||| |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| ||||| | || |||||||| |||||||| | || ||| | || ||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || |||| ||||| | ||| | | ||||||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGG 140325 >seq243 Length=773012 Score = 100 bits (110), Expect = 1e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| ||||| || ||||| || || || || | || Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||| ||||||||||| || || Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTG 391217 ||| | || |||||| | || |||||||| || ||||| | |||||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTG 552150 >seq285 Length=381527 Score = 96.9 bits (106), Expect = 1e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || || || ||||| || || || || || || | || Sbjct 34318 AATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCCTC 34377 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 34378 TGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCA 34437 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGA 391204 |||||||| || || | || || ||| | ||||| Sbjct 34438 GCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGA 34473 >seq260 Length=543572 Score = 93.3 bits (102), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 || ||||||||||| ||||| ||||| || || ||||| ||| ||||||||||| | Sbjct 36935 TACTTCAATGATGCCCAACGTCAAGCTACCAAGGATGCTGGAGCCATTGCTGGTTTGACA 36994 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 ||| | |||||||||| ||||| || || || ||| | || |||||| | ||| || Sbjct 36995 GTTATGAGAATTATTAACGAACCCACCGCGGCCGCTATTGCCTATGGAAT-GGACAA--G 37051 Query 451463 AAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 ||||| || ||||| ||| | | || ||||| || || || || ||| Sbjct 37052 AAAGA---AGGCGAAAAGAATGTGCTCGTCTTTGACTTGGGCGGTGGCACT 37099 >seq279 Length=426766 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 63898 CCTTGATCATCAAACCCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAA 63957 |||| ||| ||||| |||||||||||||||||| | ||||| |||||||||||||||||| Sbjct 274052 CCTTTATCGTCAAATCCATGAGTGATTTCATGACCAATAACAACTCCAATTCCTCCATAA 274111 Query 63958 TTTTGTGCAATCGTATAATCTAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAAT 64017 || | | | | ||| | |||| |||| | || || ||||| |||| ||||| Sbjct 274112 TTCAACGATTTTGGAAAATGTTGACTATAAAACAGGGGCTGCAAAATTCCAGCAGGAAAC 274171 Query 64018 AC 64019 || Sbjct 274172 AC 274173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975601297935608