Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq318 87.8 2e-12 >seq318 Length=230163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 107150 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 107209 || ||||||||||| | ||||| || || || | |||||||| | ||| || | ||| Sbjct 41766 AGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGTAGGAGAAGCG 41707 Query 107210 TGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 107269 ||| |||| | | |||||| ||| || || || | || | ||| || ||||| Sbjct 41706 TGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCATCGATATCTTCG 41647 Query 107270 CCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCA 107329 || || ||||||| ||| || | ||| | ||| | ||||| ||||| || |||| Sbjct 41646 CCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCACGACTTTGCCG 41587 Query 107330 TCGAGCCGTTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 |||| | |||| | ||| ||| ||| | ||||||| |||||||| Sbjct 41586 TCGATC--TTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTA 41540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||||| || || || || | ||| || | |||||| || |||||||||| ||||| Sbjct 42773 TACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTG 42714 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| |||||| || |||||||||||||| || || || || ||||| |||| ||| Sbjct 42713 GACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGAC 42654 Query 106628 T 106628 | Sbjct 42653 T 42653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589946684360240