Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq251 140 4e-28 >seq251 Length=625573 Score = 140 bits (154), Expect = 4e-28 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 154875 ATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAG 154934 ||||| || || || || || | || |||||||| | | |||| | || ||| | Sbjct 182686 ATGATCACCTATCCCTCCACCAACGGAGTATTTGAGTCGACCATTGCCGACATTTGTGAC 182745 Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 || ||||||||||||| || || || || || || ||||| ||| | ||||| || ||| Sbjct 182746 ATGATTCATGACAATGGGGGACAAGTCTACCTAGACGGAGCCAATATGAATGCCCAAGTA 182805 Query 154995 GGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACA 155054 |||||| | ||| | || || || |||||||| ||||||| || |||| ||||| Sbjct 182806 GGACTATGTAGGCCAGGAGACTACGGCTCAGATGTAAGTCATCTGAATCTACACAAAACC 182865 Query 155055 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACA 155113 || || ||||| ||||| || ||||| ||||| ||||| ||||| || || ||||||| Sbjct 182866 TTTTGCATTCCCCATGGCGGAGGAGGCCCTGGAGTAGGACCTATTGGAGT--CAAAACA 182922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579179307019840