Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq282 152 1e-31 seq275 143 6e-29 seq243 113 1e-19 seq285 100 6e-16 >seq282 Length=398316 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || ||||||||||| || || || | | || | ||||||||| Sbjct 140340 ACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCG 140399 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | |||||||| ||||||||||| || ||||||||||| Sbjct 140400 AGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGG 140459 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| ||||| || |||||| || | ||||| |||||| Sbjct 140460 ATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTG 140519 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | |||||| Sbjct 140520 CCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq275 Length=453286 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | |||||| || || || || || |||||||| || | || || | || Sbjct 384536 TCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCC 384595 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || | ||||| || || ||||| | ||||| |||||||| |||||||| || || Sbjct 384596 ATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTT 384655 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| || || |||||| || || ||||| || ||| || || || ||||| | Sbjct 384656 GTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGAT 384715 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || |||||||||||||| | |||||| Sbjct 384716 GGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 >seq243 Length=773012 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||| ||||| || | ||| | ||||| ||||| || || || ||||| | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | | ||| |||||||||||||| || || || || || || || |||||| || | Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || || || ||| || || || ||||||| ||||| || ||||||||||| |||| Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 551992 AAATCTGCAT 551983 >seq285 Length=381527 Score = 100 bits (110), Expect = 6e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 194975 GAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAA 195034 || ||| | | ||||| | ||||| || || ||||| | ||||| || |||||||||| Sbjct 34484 GAATTCCCTCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAA 34425 Query 195035 TGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTT 195094 | || || |||||||| || || |||||| || ||||||||||| || ||||| | Sbjct 34424 TTCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCT 34365 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| | || || || || | ||||| ||||| | ||||||| Sbjct 34364 CGAGGGTGATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTT 34317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109415840332142