Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq265 212 5e-49 seq280 181 9e-40 seq282 107 2e-17 seq293 96.9 3e-14 seq248 96.9 3e-14 seq1531 87.8 1e-11 seq243 87.8 1e-11 >seq265 Length=512215 Score = 212 bits (234), Expect = 5e-49 Identities = 467/699 (67%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCT---TTCATCTGGTACTCAAACCACT 551963 || || || ||||||||||||||||| || |||| | |||| | ||||| ||| Sbjct 403440 CTGAGGACAGCTTGCGAAAGAGCCAAGAGAACTCTATCTGCATCCG---CTCAAGCCAGC 403496 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| | ||||| || ||||| || || |||| | || ||||||| | || | | Sbjct 403497 ATTGAGATCGATTCTTTGTTTGAAGGCATCGATTTCTACACTTCTATTTCACGCGCAAGA 403556 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 || ||||| |||| ||||| | || ||| ||| | ||||| || ||| ||| || Sbjct 403557 TTCGAAGAACTTTGCGCTGATTTGTTCAGAGGAACTTTGGAACCCGTGGAAAAAGCCTTG 403616 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 |||||| |||| || || || ||| | | ||||| || || | ||||| ||| ||| Sbjct 403617 AGAGATGCAAAAATGGACAAGTCCTCAATCCATGACATCGTTTTGGTTGGCGGAAGTACT 403676 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 |||||||| || | | | | || || | ||||||||| ||| | | || || Sbjct 403677 AGAATTCCCAAGGTCCAGAAGCTTTTGAGCGACTTTTTCAATGGCAAAGATCTCAACAAA 403736 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 | || |||||||| ||||| || ||||| ||||| ||||||| || |||||| || Sbjct 403737 TCCATCAACCCAGATGAAGCTGTAGCTTATGGAGCCGCTGTTCAAGCTGCCATTCTTACT 403796 Query 552264 GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || | ||| |||| | | | | | || | ||||| | || || | Sbjct 403797 GGTGAGACTCATGAGACCGTCTCTGACTTACTTCTGCTGGATGTAGCCCCGCTCAGCATG 403856 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | ||||| | |||||| | ||||| | ||||||| | || || ||||| ||||| Sbjct 403857 GGAATTGAAACGGCTGGAGGAGTCATGACCACTCTTATCAAGAGGAACACTACCATTCCC 403916 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 || | | | ||| | || | ||| || || ||| | |||||||| |||||| Sbjct 403917 ACCAAGCAGACGCAGACCTTTACCACCTTTTCGGACAACCAACCCGCTGTTACCATTCAA 403976 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 | | ||| || || ||| | || ||||| || || | | || | ||| | | Sbjct 403977 GTCTATGAGGGTGAGAGAGCCATGACCAAAGACAACCATTCATTGGGCAAGTTTGACCTG 404036 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 |||||||||||| || || | || ||||| || |||||||| ||||| || || ||| Sbjct 404037 ACAGGTATTCCTCCAGCACCAAGAGGTGTACCCCAGATTGAAGTGACTTTTGACATTGAT 404096 Query 552564 GCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCT 552602 |||||||| || |||| || |||| ||| || ||| Sbjct 404097 GCCAATGGTATCCTGAACGTTTCTGCCGCTGACAAGTCT 404135 >seq280 Length=401676 Score = 181 bits (200), Expect = 9e-40 Identities = 385/570 (68%), Gaps = 6/570 (1%) Strand=Plus/Plus Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| ||||| | || | ||||| || ||| || || ||||| || |||| || || Sbjct 223467 ATTCGAAGAATTGTGCGCCGATCTGTTCAGAGGTACCATGGAACCTGTGGAACGAGCATT 223526 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | ||| | ||||| || || || | | |||||||| || || ||||| ||| ||| Sbjct 223527 GCGCGATGCCAAGATGGACAAGTCTGATATTCATGAAATCGTCCTGGTTGGCGGAAGTAC 223586 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAAT 552200 |||| || || | | || | | ||| | | |||||||| ||| |||| || Sbjct 223587 TCGAATCCCCAAGGTCCAAAAATTACTGCAAGATTTC--TTCAATGGCAAAGAATTGAAC 223644 Query 552201 GAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 || | ||||| ||||| ||||| || ||||| || || ||||||| || ||| || Sbjct 223645 AAATCCATCAATCCGGATGAAGCTGTAGCTTATGGAGCAGCTGTTCAAGCTGCCATT-TT 223703 Query 552261 TCTGGACAAACTGA-TGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319 | | ||| | |||| | ||| || | | ||| | ||||| || || | Sbjct 223704 GCAAGGCAATCAATCTGAAGCTGTTCAAGATTTGTTGCTTTTGGATGTCACACCCTTGAG 223763 Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 | | ||| | ||||| | ||||||| | |||||| | | || | | || || ||||| Sbjct 223764 TTTGGGTATTGAAACTGCTGGAGGTGTAATGACTTCTTTGATTAAGCGCAACACAACTAT 223823 Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 |||| ||| || ||| || | || ||||| || || ||| ||| || || Sbjct 223824 TCCTACCAAACAAACTCAAACTTTCACCACTTATTCTGACAACCAACCTGGAGTCTTGAT 223883 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAA 552499 |||| | |||||||| |||||| | | || || ||||| || ||||| | ||| | Sbjct 223884 TCAAGTATTTGAAGGTGAAAGAGCAATGACCAAGGATAACAACTTGCTTGGCAAGTTTGA 223943 Query 552500 TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATAT 552559 | ||||| ||||||||||| |||||||| || ||||| ||||| ||||| || || Sbjct 223944 GCTGACCGGTATACCTCCTGCTCCACGTGGAGTTCCCCAAATCGAAGTGACTTTTGACAT 224003 Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||||||| ||||| || ||||| Sbjct 224004 CGATGCCAATGGAATCTTGAACGTTACTGC 224033 Score = 96.9 bits (106), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||||||||| ||||| ||| ||||| ||| | | ||||||||||| || |||||| Sbjct 222478 CAAGCTACTAAGGATGCAGGAGTCATTGCCGGATTAGAAGTTCTTCGTATCATTAATGAA 222537 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || |||||||||||| |||| ||||| ||||| ||| Sbjct 222538 CCGACTGCTGCTGCAATTGCTTATGGCCTTGACAAA 222573 >seq282 Length=398316 Score = 107 bits (118), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 ||| |||||||||||||| || |||||| ||| || || || | | || | Sbjct 140333 ACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCC 140392 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| |||||||||||||||||||| | | ||| ||||| ||||||||||| ||||| Sbjct 140393 ATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTT 140452 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||| || || || || ||||||||| || | | | | || || | |||| Sbjct 140453 GTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAG-GCTTCCACCTCCAAGGTAA 140511 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || ||||| || || || || || ||||||||| Sbjct 140512 TCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 140549 >seq293 Length=331714 Score = 96.9 bits (106), Expect = 3e-14 Identities = 306/470 (65%), Gaps = 7/470 (1%) Strand=Plus/Plus Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTC-GCGAAATGTTAAGTTC 552175 |||||| | || || ||||||||||| |||||||||||||| | || | || ||| Sbjct 10667 GAAATTATTCTGGTGGGTGGATCTACCAGAATTCCTAAAATACAGCAATTAGTCAAGGAG 10726 Query 552176 TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGG 552235 || |||| ||| ||| | | | |||||||||| ||||| || || ||||| || Sbjct 10727 TT-CTTCAGTGGAAAAGAGCCCTCTCGAGGTGTTAATCCGGATGAAGCAGTGGCCTACGG 10785 Query 552236 TGCCGCAATTCAAGCAGCTATTCTTTCTGG-ACAAACTGATGAAAAACTACAAAATATTG 552294 ||| |||||||| || ||| | ||||| | | || || | || || || | Sbjct 10786 TGCTGCAATTCAGGCTTGCATTTTATCTGGCGCCGATTGTGGAGATTCTTCA----ATGG 10841 Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 | | | ||||| | ||| | ||||| || | ||||| ||||||||| | ||| ||| Sbjct 10842 TTTTACTGGATGTAAATCCCTTGTCTCTGGGCATTGAAACCGTTGGAGGTGTCATGTCTA 10901 Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 |||| ||||||||| ||||| | || || | || ||| || | Sbjct 10902 CAATTATTCCCAGAAATACTGTCATTCCATCAAAGAAGCAACAGGTTTTTAGCACAGCTG 10961 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 |||| || ||| |||| || || | | | |||||||| | | | || |||| Sbjct 10962 CAGACAACCAAGAAACTGTCACCATCAAGGTGTACGAAGGAGAGCGTCCAATGACCAAAG 11021 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTAC 552534 |||| | | | || || || | || | || |||||||| || | || || || | Sbjct 11022 ATAACCACCTTTTGGGGACATTCGACTTGAACGGCATTCCTCCAGCCACCCGAGGTGTTC 11081 Query 552535 CGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 | | |||||||| || || | | ||||||||||| || ||| |||| Sbjct 11082 CCAAGATTGAAGTAACCTTTCAAGTGGATGCCAATGGTATCATGACTGTG 11131 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 550419 CATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTA 550478 || |||| ||||| | |||||||||||||| || |||||||| ||||| || || | Sbjct 10113 CAGATTTCAATGATGCTCAACGTCAAGCTACGAAGGATGCTGGCACCATTGCCGGTCTCA 10172 Query 550479 ATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || | || | || ||||||||||||||||| || || | ||||||||| Sbjct 10173 ATATCATTAGGATCATCAATGAACCTACTGCAGCCGCCATCGCATATGGA 10222 >seq248 Length=638557 Score = 96.9 bits (106), Expect = 3e-14 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 552342 GGTATTATGACTAATCTT-ATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT 552400 ||||| ||||| || ||| ||| || ||||| ||||||||| || || || Sbjct 637565 GGTATCATGAC-AACCTTGATCATGAGGAATACCACTATTCCTACCAAGCAAACTTAAAC 637507 Query 552401 ATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAG 552460 || |||| || || || || ||| | |||| || |||||| | | |||||| || | Sbjct 637506 CTTCACTACCTACTCCGACAACCAACCCACTGTCACCATTCAAGTCTATGAAGGTGAGCG 637447 Query 552461 AAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGC 552520 | ||| || || ||| ||||| | || | || ||||||||||| || Sbjct 637446 TGCCATGACTCGTGACAACCATCTCCTTGGCAAGTTCGACTTGACTGGTATTCCTCCAGC 637387 Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580 || || |||||||| |||||||| || || || || |||||||||||||| || ||||| Sbjct 637386 ACCCCGAGGAGTACCCCAAATTGAGGTCACCTTTGACATCGATGCCAATGGTATCTTGAA 637327 Query 552581 TGTGACTGCT 552590 ||| ||||| Sbjct 637326 TGTTTCTGCT 637317 >seq1531 Length=5859 Score = 87.8 bits (96), Expect = 1e-11 Identities = 165/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 || || ||||||||||||||||| ||||| |||||||| | ||||| || ||||| || Sbjct 2382 GTGTTTGATTGCTGGTTTGAATCTGGTTCAATGCCTTACGCTCAAAGTCACTATCCCTTC 2323 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || ||| ||| | ||||| || | || | ||| |||||| | | ||| Sbjct 2322 GAGAACAAGAAAGAATTTGAAGAT------GCTTTTCCGGCGGATTTTATTGCTGAAGGG 2269 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 | || ||||| || || |||||||| || || | || | || || || | ||| | Sbjct 2268 ACAGACCAAACCCGAGGCTGGTTTTACACTCTCCTTGTGCTCTCAACTGCACTCTTCAAC 2209 Query 368974 AAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAG 369033 || ||| | || || || | || || | || |||| || ||||| ||||||||| Sbjct 2208 AAGCCGCCCTTCAAGAACCTCATCGTCAACGGCCTTGTCCTGGCCTCTGACGGTCAAAAG 2149 Query 369034 ATG 369036 ||| Sbjct 2148 ATG 2146 >seq243 Length=773012 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| || |||||||||||||| ||||| | |||||||| || ||||||||||| || || Sbjct 552138 ATCCTCGAGTTGTTTTCCGGCGAAAATCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTT 552079 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAA 563437 ||| || || || || || || || ||||| | | ||| ||||| |||| Sbjct 552078 ATCCTGGATCTTGGCCTTGACATTTTCGATAGTATCGGAAGGCTCTAC-CTCGAGGGTAA 552020 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || | |||||| |||||||| ||||| Sbjct 552019 TGGTCTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 551983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029051356256740