Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq240 89.7 6e-13 seq230 89.7 6e-13 >seq240 Length=835721 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/239 (69%), Gaps = 15/239 (6%) Strand=Plus/Plus Query 142380 AAGGTTTAGAAGGAGCTATTTTAAAATATCCAAATGATATGTATATAC----CAGGTAAA 142435 ||||| | |||||| || | ||| ||| ||| | |||||||| |||| || Sbjct 443480 AAGGTCTGGAAGGATTGGTTCTTAAAGATC----TGAAAAGTATATACGAGCCAGGCAAG 443535 Query 142436 AGAAAATGGATAAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGCA 142495 | | ||| | || | |||| ||||||||| |||| ||||| ||||| ||||| || Sbjct 443536 CGTCATTGGTTGAAAGTCAAAAAAGATTACTTACACGAGGGTGCTATGGCTGATTCGGCT 443595 Query 142496 GATTTAGTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTCT 142555 ||||| || || ||||| |||| ||||| ||| || | |||| | || |||||| Sbjct 443596 GATTTGGTGGTCTTGGGCGCATGGTATGGGTCAGGAAAGCG---TGGAAGTATCATGTCT 443652 Query 142556 ATATTTCTTATGGGTTGTTATGATGAAGATACAAAT--ACATGGAAAACTGTTACAAAA 142612 |||||| | ||||| ||| ||| ||| ||| | | ||||||||| || || ||| Sbjct 443653 ATATTTTTGATGGGCTGTCTCGAT-AAG-GCCAAGTCGAAATGGAAAACAGTGACTAAA 443709 >seq230 Length=975444 Score = 89.7 bits (98), Expect = 6e-13 Identities = 227/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || |||||||| || ||| |||||||| ||||| |||||||| || || || Sbjct 390078 AAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTC 390019 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 ||||| ||||| || |||| || || | ||| || || || ||||| ||| |||||| Sbjct 390018 AATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAG 389959 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 ||||| ||||| |||| || || || |||| | | | | || ||| | ||| Sbjct 389958 AAAATTCCTTCGACTGAAGCGAAAGCGACAATTC-TTTCTGCATAG--GAAGCGTTATCC 389902 Query 37353 GAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAAC-ACATTCAATTGTTTCAAT 37408 | | ||||| || | ||| | ||||| | ||| || | | ||||||||| Sbjct 389901 GCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGC-ACTGTTTCAAT 389843 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || ||||| || ||| | |||| | || || |||||||| || | ||| Sbjct 389842 TGCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACT 389783 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAA 37508 || |||| ||||| ||||| ||||| | ||||||| Sbjct 389782 GTAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAAA 389743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592282549281040