Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq239 185 7e-42 >seq239 Length=840022 Score = 185 bits (204), Expect = 7e-42 Identities = 419/630 (67%), Gaps = 0/630 (0%) Strand=Plus/Plus Query 29700 CTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCT 29759 ||||| || | ||| || ||| ||||| || | |||||| | | | | || ||| Sbjct 247653 CTCCATGGCCAGATCTTCAAACTTGAAGTCTTCAATGTTCTCAATCTTTCGCTTGATCAC 247712 Query 29760 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 29819 || |||| || || | || || | || ||||||||||||| | || | || | Sbjct 247713 AAGCTTGGGGAACGGCTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCGTCGATATGGTT 247772 Query 29820 CAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29879 || |||||| ||||| || || ||||| || ||||| ||||| | | | ||||| || Sbjct 247773 CAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCAC 247832 Query 29880 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 29939 ||||| ||||| | || | || | || || ||||| || ||||| || | || Sbjct 247833 ATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCC 247892 Query 29940 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29999 ||| || | || || ||||| | || || |||||| || | | ||||||||| || Sbjct 247893 CATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATTG 247952 Query 30000 ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30059 | | || || || || | |||||| || || ||| | |||||||| || || Sbjct 247953 AGCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCACA 248012 Query 30060 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30119 || |||||| |||||||| || || |||||| | || ||| | | | | | ||||| Sbjct 248013 CATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCTG 248072 Query 30120 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30179 |||||| || || ||||| || || |||||| ||| || || || ||||| | Sbjct 248073 ATCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGACG 248132 Query 30180 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30239 ||| ||||| ||||| || || || || || |||| | || || || ||| Sbjct 248133 CCATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGCTT 248192 Query 30240 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30299 ||||| ||||||||| || || ||||| ||||| ||| || ||| || || | || Sbjct 248193 GTCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTCAGACAATTC 248252 Query 30300 TTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 ||| || || || || | || |||||| Sbjct 248253 ATTGCCATTGGTTGAACCACGGATGAACCA 248282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594562395098