Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq275 154 1e-32 seq311 127 2e-24 seq252 123 2e-23 seq282 118 8e-22 seq285 109 4e-19 seq243 82.4 6e-11 >seq275 Length=453286 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || | || || || |||||||||||||| || || |||||||| || | | Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||||||||| || ||||| |||||||| || || || || ||| Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || ||||| || || || ||| |||| | || ||||| | || || Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACC 384704 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || |||| || || || |||||||||||||| || |||||||| || Sbjct 384705 TCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATTGT 384754 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| ||||| || || || || ||||| || | || ||| | | Sbjct 384308 ACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCC 384367 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||||||||| || || || |||||||| || ||||| || |||||||| || || Sbjct 384368 ATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTT 384427 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| |||| | || || |||| || || ||||| |||| Sbjct 384428 GTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGAT 384487 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| || || || ||||| || || || || |||||| Sbjct 384488 CGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATG 384524 >seq311 Length=259814 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| ||||||| ||| ||||| | || ||||| || || |||||||| |||| | Sbjct 106093 CCTCCTCGCAAACGTAGAACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGAG 106152 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| ||||||||||| || ||||| |||||||| || ||||| || ||| Sbjct 106153 AGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 106212 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || ||||| || ||||| || || || ||| |||| | || ||||| Sbjct 106213 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGA 106262 >seq252 Length=615714 Score = 123 bits (136), Expect = 2e-23 Identities = 315/473 (67%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 13649 ATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGT 13708 |||| |||||| ||||| || || | ||||||| || ||||| || | || ||| Sbjct 534582 ATATCGAATTTGCGTTTGCATCCCGCGTAATTCATAAATCTGATTTTTCCGAAAATAGGT 534523 Query 13709 CGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCG 13768 || || ||||| | |||| ||| ||||| || |||||||||||||| || |||| Sbjct 534522 CGTTCAGTCCAGCCTTGATCATGAATTCCGACAATGGACCACATGCAACCAACAAAACCA 534463 Query 13769 TTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT--AAAG 13826 || | || |||||||||| ||| ||||| || || || | | | ||| || | Sbjct 534462 TTAGAGTCCGATCCATCCAAAGAGTACTTGTCATTAAAGTAAA--GAGCAAATTCCAAGG 534405 Query 13827 CCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATC 13886 | || || | ||| || | || ||||| |||||||| || | ||| ||| Sbjct 534404 CTTCTTCTGGATTTCGGGTCCACTCCAGGATCTTTTTGGCCCAATACATCCGCATGAATC 534345 Query 13887 CGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATAT-GTCATGA 13945 | || ||||| |||| ||||| | || | ||||| || ||||| ||||| || || Sbjct 534344 CATGAATTTTACCTTCAGTTTTCAATTGGATTTGAGCCGCATTCCA-AATATCTTCGTGG 534286 Query 13946 GTTTCGGAATTTTCTAATTCTCTTCTAT--TGTAACAATATTCCCGGCCTTCGTTTGCAT 14003 |||| || | ||||| ||||||| | |||| |||| ||||| || || | || Sbjct 534285 GTTTTGGCAGCGTCTAA--CTCTTCTTTGGTGTACAAATACTCCCGCTTGTCATTGGTAT 534228 Query 14004 GCAGACTCAACGTTTCTTTAGCCCAATCAGGCGCGCCTTCAAACCGATCATAATTGATGT 14063 | |||| || | || |||||||| | | |||| | ||||| || | Sbjct 534227 GATCCTTCAAAGTGTTCTTGGCCCAATCGCTCCCACCTTTGATATTGTCATAGTTTGGAT 534168 Query 14064 TGTAATAGCAAAAGTTGTCTGCCAATTCTCGTCGAACAAAACACTCTTCTATG 14116 |||| || ||||||||||||| ||||| | ||| || | | ||||| ||| Sbjct 534167 TGTAGTAACAAAAGTTGTCTGATAATTCGCTTCGGACCACGGATTCTTCAATG 534115 >seq282 Length=398316 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| ||||| ||||| | || | |||||| || ||||||||||| || || || || | Sbjct 140321 TCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 140380 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | | |||| || | ||| || || ||||| |||||||| |||||||| || || Sbjct 140381 CAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGG 140440 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || ||||| ||||| || || || || | || | ||||| || | |||||| Sbjct 140441 AATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCAC 140500 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||| ||||| || | || || ||||| || ||||| Sbjct 140501 CTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq285 Length=381527 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || ||||| |||||||| || ||||| || ||||| || || || Sbjct 34473 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTG 34414 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || || ||| |||| | |||||||| | ||||| || || |||| Sbjct 34413 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATG 34354 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | ||||| || || |||||||| Sbjct 34353 GTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCAT 34319 >seq243 Length=773012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 ||||||| || ||||| || | ||| | | |||| || | ||| || || || || | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 |||| | || || || || ||||| || || ||||| || || || || ||| ||| Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | ||| || || | || || || || || | || || || || |||||||| || | Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 101460 ATATCTGCATGGT 101472 | ||||||||||| Sbjct 551992 AAATCTGCATGGT 551980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396256058071482