Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq275 102 6e-17 >seq275 Length=453286 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | | ||| ||||| || || || || || || |||||||| ||||| Sbjct 384524 GCCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGA 384583 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || ||||| ||||| || ||||| |||| || || || || | ||| Sbjct 384584 GAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGG 384643 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || ||| | | | || || | ||| || Sbjct 384644 AATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAAC 384703 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTG 48772 ||| | || || || ||||| || ||||||||||| || |||||||| || || Sbjct 384704 CTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATTGTCTG 384757 Score = 100 bits (110), Expect = 2e-16 Identities = 267/405 (66%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 8953 TTTATTTTAATAAAATGTTACAATAAACTGATATATAATT---AATTAGTACCGGTTGAC 9009 ||| ||| |||||| | | |||| | |||| | |||| ||||| | ||||| || Sbjct 117129 TTTGTTTCAATAAATTCT--CAATGCAATGATG-ACAATTTTCAATTACTTCCGGTAGAT 117073 Query 9010 CCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTACCAGTGTGGGA 9069 ||||| || || ||||| | || ||| || | || || ||| | | | ||| Sbjct 117072 CCAAATCCGCCTTCTCCTCTATCAGTGCTGTTCAAGCTGGTGACTTCTTCGATTTCAGGA 117013 Query 9070 TAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCT 9129 || || | |||||||| ||||||||||||| ||| || || || | | || || Sbjct 117012 TACTCAATCTTTTCACAAACCAATTGAGCAATCCGGTCACCTTTTTTAATTTCGAACTCA 116953 Query 9130 GTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACA 9189 | | | ||||||||| || || || || ||||| || | ||||| | ||| | || Sbjct 116952 GCTTGAGCATGATTGAAGAGGACAACGCCAACGTTTCCAGTATAATCTTGATCAACTACT 116893 Query 9190 CCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCG 9249 || || || |||||||| ||||||| | | ||||| ||||| || || ||||| || Sbjct 116892 CCCGCTCCAACGTCGATATGGTGCTTGGCTGAAAGTCCTGAGCGAGGAGCAATTCGTCCA 116833 Query 9250 TAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCCGTGTTTT 9309 ||| ||| | |||| | | | ||| ||| || | | |||| || || Sbjct 116832 TAGGTTCCATCAGGTACACGAATAGAAATGTCAGTCTTGGCAATGACCTTTCCTTGGGCC 116773 Query 9310 GGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCC 9354 ||||| || ||| || |||| | ||||||| | ||||| ||| Sbjct 116772 GGAATGACATAGTCATATGCGCTATAGAGATCATATCCAGCAGCC 116728 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || || ||||| || || ||| | || Sbjct 384306 AGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGC 384365 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || || || |||| || || ||||| | ||||| ||||||| Sbjct 384366 CCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCC 384425 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || |||| ||| ||||| | || Sbjct 384426 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTG 384485 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||| || || || || ||||| Sbjct 384486 ATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916122976198