Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq318 152 1e-31 seq230 113 8e-20 >seq318 Length=230163 Score = 152 bits (168), Expect = 1e-31 Identities = 305/440 (69%), Gaps = 13/440 (3%) Strand=Plus/Minus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||| | |||||| ||||| ||||| ||| |||||||||| ||||| ||||| Sbjct 42773 TACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTG 42714 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||||| |||| || |||||||||||||| || || | || ||||| | ||| ||| Sbjct 42713 GACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGAC 42654 Query 213651 ACCAGTATCTGGCT--CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 | | || ||| ||| | | | || |||||||| | | || | | | | Sbjct 42653 TCAATGAT--GGCAGCCCAAACCT-CTTGAGCCTTGACTTGCTTGCGGA-ATTTGCCTTC 42598 Query 213708 GTAGCCTCGTACTGTTCGTAGAG-CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCC 213766 ||||||||| | ||||| | ||| | || || | ||||||| | ||| ||| Sbjct 42597 --AGCCTCGTATTTCTCGTACAATCTC-TCAAAGTCTTCGCCCCAGCAGTCGGCCAATCC 42541 Query 213767 CGGACAGG-ATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGA 213825 |||||| ||| |||||||||||||||||| ||| || |||| | | ||||| Sbjct 42540 CGGACACTCATG-GGGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGA 42482 Query 213826 ACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAG 213885 | | ||| || | ||| ||| | ||| ||||| | | |||| || ||| ||| Sbjct 42481 ATAAGTCGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGT 42422 Query 213886 AGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGG 213945 ||||||||| ||||| | || || ||||| |||||||||||||| |||| |||||||| Sbjct 42421 GGTTTTTGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGG 42362 Query 213946 CAAAGGCGCCCGGCCTCTTG 213965 | ||||| || ||||| ||| Sbjct 42361 CGAAGGCTCCTGGCCTTTTG 42342 >seq230 Length=975444 Score = 113 bits (124), Expect = 8e-20 Identities = 331/504 (66%), Gaps = 7/504 (1%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || | |||||||| ||||| || || || || | || ||||||||| Sbjct 390363 TGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCTCC 390304 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC-GTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| || || || ||| |||||| || || || | || |||| Sbjct 390303 ATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCAT-CCGAGCTCAAGAAGCAA 390245 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG-G 48017 | || ||||| |||| |||||| | | ||| | | | |||||||| ||||| | Sbjct 390244 TCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAGTCG 390185 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| || || || | || || ||||| | || || | ||||||||| | || || | Sbjct 390184 ACAAGGT-AAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGATTT 390126 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || || | || || |||||| || ||||||| || | || ||| |||| Sbjct 390125 GCAAAATCCTCTTTTCGGACAACTTGTTGACCAAGTGCTTG---TACATCAAGCATGCAA 390069 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 ||||| | ||||| |||||||| | | ||| | ||||| ||| | || |||| Sbjct 390068 AGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGCA 390009 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | || | || || ||||||||||| || || || || || ||||| || || | Sbjct 390008 TCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTCCTT 389949 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | |||| ||||| ||| | || ||| | | |||||||| | | ||||||| Sbjct 389948 CGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCCGCATTGATCCAGT 389889 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCT 48341 | |||||| | |||||||||| Sbjct 389888 TCAACGCCCATTTGGCCTTCTTCT 389865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931478934115840