Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq318 120 6e-22 >seq318 Length=230163 Score = 120 bits (132), Expect = 6e-22 Identities = 295/447 (66%), Gaps = 3/447 (1%) Strand=Plus/Minus Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 |||||| || |||||| || |||||||| |||||| ||||| |||| | | || | Sbjct 42775 TATACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGT 42716 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| ||| ||||||||||||||||||| | ||| |||||||| | ||| | Sbjct 42715 TGGACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCG 42656 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG 221927 | | | || |||| | ||| || | || | | || | || || | Sbjct 42655 ACTCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCGGAATTTGCCTTCAG 42596 Query 221928 TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 || | | | || || | | ||||| | ||| || | ||| ||| || | Sbjct 42595 CCTCGTATTTCTCG---TACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCG 42539 Query 221988 GACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGA 222047 ||||| ||||||||| || ||||| | || ||||| | | |||||| | Sbjct 42538 GACACTCATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATA 42479 Query 222048 GGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGT 222107 ||| || ||||| ||| | ||||| || | | || ||| |||||| |||| || Sbjct 42478 AGTCGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGT 42419 Query 222108 TTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCA 222167 |||| | |||||||| || || || || || ||||||||||| |||| |||| ||| | Sbjct 42418 TTTTGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGA 42359 Query 222168 GAGCGCCGGGTCGCTTGTTGCCACCCT 222194 || || || | |||||||| |||| Sbjct 42358 AGGCTCCTGGCCTTTTGTTGCCTCCCT 42332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928791089549440