Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq239 86.0 4e-12 >seq239 Length=840022 Score = 86.0 bits (94), Expect = 4e-12 Identities = 171/253 (68%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422 ||||| ||| ||| | |||||| || |||| || |||| |||||||| | || Sbjct 247765 ATATGGTTCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAA 247824 Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482 ||| || ||| ||||| ||||| || | | || || || |||||||| || || | Sbjct 247825 CCGGTCACATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACA 247884 Query 78483 CCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT 78542 ||||| | ||| || || ||||||||||||||| || |||| || || | Sbjct 247885 CCTAATCCCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCT---CACCATTGGCC 247941 Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGA 78602 |||||||| || ||| |||||||| || | ||||| | | ||||| || Sbjct 247942 ACGTAAAATTGAGCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGG 248001 Query 78603 TTCCAAGCAGACA 78615 ||||||||| ||| Sbjct 248002 TTCCAAGCACACA 248014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300143077166800