Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq251 143 3e-29 >seq251 Length=625573 Score = 143 bits (158), Expect = 3e-29 Identities = 178/241 (74%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 138174 TGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAAT 138233 ||||||| || |||||||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 182922 TGTTTTG--ACTCCAATAGGTCCTACTCCAGGGCCTCCTCCGCCATGGGGAATGCAAAAG 182865 Query 138234 GTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCT 138293 || || |||| ||| ||||||| |||||||| || ||||| | ||| | ||| ||| Sbjct 182864 GTTTTGTGTAGATTCAGATGACTTACATCTGAGCCGTAGTCTCCTGGCCTACATAGTCCT 182805 Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 || || ||||| | ||| || || || || || || || || ||||||||||||| || Sbjct 182804 ACTTGGGCATTCATATTGGCTCCGTCTAGGTAGACTTGTCCCCCATTGTCATGAATCATG 182745 Query 138354 TTACATATCTGTCTG--ATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCA 138411 | ||| | |||| | ||| | | |||||||| || | || || ||||| || |||| Sbjct 182744 TCACAAA--TGTCGGCAATGGTCGACTCAAATACTCCGTTGGTGGAGGGATAGGTGATCA 182687 Query 138412 T 138412 | Sbjct 182686 T 182686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578964919417520