Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq318 87.8 2e-12 >seq318 Length=230163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| ||||||| | ||| ||| ||| | |||| | |||| |||| || Sbjct 41540 TACTTTGGCTTCAAAACTTTGGAGCGGAGTTATTTGCTCAA--GATCGACGGCAAAGTCG 41597 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 ||||| || ||| | ||| | ||| | ||||| ||||||| || || ||||| || | Sbjct 41598 TGGAACGGCCCCAGCATATGCTGATGAGAGTCGCCGTCGGCATTCATGGCGAAGATATCG 41657 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 || | || | || || || ||| |||||| | | |||| |||||| | || | Sbjct 41658 ATGATATCATTGAAACTTATAACATGATGTCGGAGAAACTATTCACTCACGCTTCTCCTA 41717 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCT 75372 || | |||||||| | || || || ||||| | ||||||||||| || Sbjct 41718 CCATGTTCAATGCCGCAACTCCCAGGCCGCAATTATCCAGTTGCTTTCT 41766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596535103362880