Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq282 134 2e-26 seq243 105 1e-17 >seq282 Length=398316 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||| |||||||| ||||| | || | ||||| ||| |||||||| || Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| || | |||||||||||||||||| || | |||||||| ||||| Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||| ||||| || |||| || | || ||| || ||||| | || || Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACC 140501 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || || || || || || || || ||||| |||||||| Sbjct 140502 TCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Score = 98.7 bits (108), Expect = 2e-15 Identities = 169/244 (69%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| ||||||||||| ||| || || || Sbjct 140541 ATTTGCATACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTG 140600 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||| | || | ||| || | ||| || || ||||| || || | || ||| Sbjct 140601 TAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGA 140660 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| ||||||| || | ||| || || ||||| Sbjct 140661 TCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAG 140720 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 | |||||| || || || || || || || || || || || ||||| ||||||||||| Sbjct 140721 GCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTT- 140779 Query 193365 TTAG 193368 |||| Sbjct 140780 TTAG 140783 >seq243 Length=773012 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||||||||| ||||| || || || || || ||||| ||||| || || Sbjct 552138 ATCCTCGAGTTGTTTTCCGGCGAAAATCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTT 552079 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| || | |||| ||||||||||||| ||| || || || || || Sbjct 552078 ATCCTGGATCTTGGCCTTGACATTTTCGATAGTATCGGAAGGCTCTACCTCGAGGGTAAT 552019 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | ||||| || || || ||||| Sbjct 552018 GGTCTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 551983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899602377484320