Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq275 98.7 2e-15 seq282 93.3 8e-14 seq311 84.2 4e-11 seq285 84.2 4e-11 >seq275 Length=453286 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || ||||| | || || |||| |||||||| || ||||||||||| || | Sbjct 384569 GATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACG 384628 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || || || || || || || || ||||| || ||| || ||||| || | Sbjct 384629 TTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGT 384688 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | || || || || || ||||| || |||||||| ||||| | || ||||| Sbjct 384689 ATCAGAAGGCTCAACCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTG 384748 Query 192534 CATT 192537 |||| Sbjct 384749 CATT 384752 >seq282 Length=398316 Score = 93.3 bits (102), Expect = 8e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| || |||| ||| || ||| || ||||| Sbjct 140547 ATACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCG 140606 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| |||| |||| ||| || ||||||||||| || | || ||||| || Sbjct 140607 CTCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGG 140666 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| || || || || | || || | || Sbjct 140667 GGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCA 140726 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAG 192544 || || || |||||||| || || || | || || | ||| || |||||||| |||| Sbjct 140727 ACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTT-TTAG 140783 >seq311 Length=259814 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||| | ||||| || ||||||||||| | || || |||||| || || || Sbjct 106092 ACCTCCTCGCAAACGTAGAACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGA 106151 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| |||||||| || || |||||||| || | || ||||| || || Sbjct 106152 GAGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGG 106211 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || ||||| || ||||| || ||| || ||||| Sbjct 106212 AATACCTTCCTTGTCTTGGATCTTAGCCTTGACATT 106247 >seq285 Length=381527 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 || || |||||||| || ||||||||||| || | || ||||| || || ||||| || Sbjct 34476 TCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCC 34417 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || ||| || ||||| || | || || | || || || || || Sbjct 34416 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTG 34357 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||||| || || | ||||| | || ||||||||||| Sbjct 34356 ATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTT 34316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984421649255100