Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq230 116 7e-21 seq285 84.2 4e-11 >seq230 Length=975444 Score = 116 bits (128), Expect = 7e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 || |||||||| |||||||| ||||||||||| || || || ||||| || || ||||| Sbjct 390078 AAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTC 390019 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 ||||| ||||| ||||||| ||| || ||||| || || | ||||| || | |||||| Sbjct 390018 AATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAG 389959 Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCA 39284 || || || || || | || || || | |||||| || || Sbjct 389958 AAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCA 389917 >seq285 Length=381527 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 || || |||||||| || |||||||| || || | || || || || || ||||| || Sbjct 34476 TCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCC 34417 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| || ||| || ||||| || || || || | || || || || || Sbjct 34416 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTG 34357 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||||||| || || | ||||| | ||| ||||||||||| Sbjct 34356 ATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTT 34316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905083660510800