Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq233 91.5 4e-13 >seq233 Length=917343 Score = 91.5 bits (100), Expect = 4e-13 Identities = 191/278 (69%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||||| |||||| |||||| || || | ||| || ||||| || | || || Sbjct 513325 CATAATGGACTCCATAGCCTTGATCAATCGTCTCTGGATGTAACCGGTCTCGGCGGTCTT 513384 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683 || || ||||| || ||||| |||| || ||||||||||||||| | | ||| || Sbjct 513385 GACGGCGGTATCGATCAGACCTTCACGTCCTCCCATAGCATGGAAGTAAAATTCTGACGG 513444 Query 302684 -GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCG 302739 ||| | || |||| | | || |||| || ||||| | | |||||| || |||| Sbjct 513445 AGTC-AAACCGGCCAA-ATATGAATTCTCCACAAAACCTCTGGACTCGGGACCGTAATCA 513502 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 || |||| | || ||||||| || | ||| | ||| ||||||| |||||||| Sbjct 513503 TC---CTTGTTGAAATGTGGCAACGTTCGCTTCCGGAACCCGAATGGGATTCGCTTTCCT 513559 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||| || || || | || | ||| | ||| || Sbjct 513560 TCCACGTTTTGTTGACCTACACAAGCAATGACCTGAGA 513597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471730364450962