Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq231 132 6e-25 seq318 96.9 4e-14 seq223 91.5 2e-12 seq1186 87.8 2e-11 seq230 87.8 2e-11 >seq231 Length=939256 Score = 132 bits (146), Expect = 6e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | || || | |||||||| ||||||||||| | | || Sbjct 579139 GCTTGGCCAACTCTCCGGGGAGGAGGAGCCTGACGGCGGTTTGGATCTCGCGAGAGGTGA 579080 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| |||| |||| ||||||| | |||| || |||| | Sbjct 579079 TGGTGGACCTCTTGTTGTAGTGAGCCAAACGGGAAGCCTCGGCGGCGATACGTTCGAAGA 579020 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || |||||||||| ||| | |||| |||||| || |||||||| Sbjct 579019 TATCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATTCCGGTGTCGGGGT 578960 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 578959 GAACCTGCTTCAACACCTTGTAGATG 578934 >seq318 Length=230163 Score = 96.9 bits (106), Expect = 4e-14 Identities = 181/263 (69%), Gaps = 16/263 (6%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 || |||||| || ||||| || || ||| |||| | |||| | || |||||||| || Sbjct 44463 CTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCC 44404 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGG---GCGT 1627097 |||||||||||| |||| ||||| |||||| || | | ||| || | Sbjct 44403 CGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACA---GCTTGGCAAAATT 44347 Query 1627098 CGCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157 | ||||||| || || ||| | |||||||||||||||| | ||| |||| || || Sbjct 44346 GGGGTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGC 44287 Query 1627158 CGCCATGTCGATGGTGACCCGG---TTGGGC--ACCTCCCACACGGTCTTGAAGATGGCC 1627212 || ||| | || | ||| || ||| | |||||| ||||| ||| ||| |||| Sbjct 44286 CGACATCTTGAGG-----ACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTAGAGGGCC 44232 Query 1627213 TTGAGGTCGGGCGGCACCTCGTC 1627235 |||| |||| ||| | ||| || Sbjct 44231 TTGATCTCGGCCGGGATCTCTTC 44209 >seq223 Length=1298089 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| ||||||||||||||||||| ||||| | |||||||| |||||||||||||| Sbjct 7425 TGCAAAACTGTGGCCAACATGATCAAAGGCAAAACTCCCGAGGAAATCCGCAAGACCTTC 7366 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 7365 AACATCAAGAACG 7353 >seq1186 Length=6619 Score = 87.8 bits (96), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1254386 GATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGT 1254445 |||||| || | | ||| ||| | |||||| |||| |||| ||| | |||| Sbjct 6619 GATCTCCCGAGAGGTGATGGTGGATCTCTTGTTGTAGTGAGCCAAGCGGGAAGATTCGGC 6560 Query 1254446 GCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGA 1254505 | ||||||| |||| || |||||||| || |||||||||| ||| | |||| || Sbjct 6559 GGCGATGCGTTCGAAGATATCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAAGA 6500 Query 1254506 GATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| || ||| ||||| || ||||| | ||||||||||||| Sbjct 6499 GATTCCGGTGTCAGGGTGGACTTGCTTCAACACCTTGTAGATG 6457 >seq230 Length=975444 Score = 87.8 bits (96), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 1254386 GATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGT 1254445 |||||| || | | ||| ||| | |||||| |||| |||| ||| | |||| Sbjct 343065 GATCTCCCGAGAGGTGATGGTGGATCTCTTGTTGTAGTGAGCCAAGCGGGAAGATTCGGC 343124 Query 1254446 GCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGA 1254505 | ||||||| |||| || |||||||| || |||||||||| ||| | |||| || Sbjct 343125 GGCGATGCGTTCGAAGATATCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAAGA 343184 Query 1254506 GATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| || ||| ||||| || ||||| | ||||||||||||| Sbjct 343185 GATTCCGGTGTCAGGGTGGACTTGCTTCAACACCTTGTAGATG 343227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106759568776442