Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq282 156 4e-33 seq275 129 5e-25 seq285 109 5e-19 seq311 107 2e-18 seq318 93.3 4e-14 seq230 93.3 4e-14 >seq282 Length=398316 Score = 156 bits (172), Expect = 4e-33 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || ||||| | || || |||||| || Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||||||||||||||| ||||| ||||| |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| |||||||| ||||| || || ||| | | ||||||| |||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||| ||||| || || || |||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTG 140341 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || || ||||| ||||| || || ||| || Sbjct 140776 ATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCCTCC 140717 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||| || || || || || ||||| Sbjct 140716 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 140657 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || || || ||||| ||| | | | || ||||| ||| Sbjct 140656 CAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTACAAC 140597 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || ||| | || ||||| Sbjct 140596 ATCCAAAAGGAGTCTACATTGCATTTGGT 140568 >seq275 Length=453286 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| || || || || || ||||| || || | Sbjct 384754 ACAATGCAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGAGGTTGAGCCT 384695 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || || |||||||||||||| || || || || || || Sbjct 384694 TCTGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGAC 384635 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||||||||||||||| || || || |||||||| | | | | || || || Sbjct 384634 CAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCTCTCTGACTAC 384575 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || |||||||| || || |||||||| ||| ||||| | |||||| Sbjct 384574 AATATCCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGGGGAGGC 384524 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || | || ||||| || || || || || || || | || Sbjct 384523 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCC 384464 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||| || || || || || ||||| Sbjct 384463 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 384404 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || || || |||||||| | | | | ||||| || ||| Sbjct 384403 CAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAAC 384344 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || |||||||||||||| | || || ||| Sbjct 384343 ATCCAGAAGGAGTCTACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGC 384296 >seq285 Length=381527 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || ||||| || || ||||| || || || | Sbjct 34319 ATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCCTCT 34378 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| || ||||| ||||| ||||| Sbjct 34379 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 34438 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||||||||||||||||| || || || |||| || Sbjct 34439 CAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGA 34473 >seq311 Length=259814 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| ||||| || || || ||||| |||||||||||||||||||| || Sbjct 106235 AAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGCAAG 106176 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||||||| | | | || || || || || || |||||||| || |||| Sbjct 106175 CAATTGGAGGATGGCCGCACTCTCTCCGACTACAATATCCAGAAGGAATCCACTTTACAT 106116 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGGA 24934 ||||| | || ||||| ||||| ||| Sbjct 106115 TTGGTTCTACGTTTGCGAGGAGGTGGA 106089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| Sbjct 108293 AAGATCCAAGACAAAGAAGGAATACCTCCGGATCAGCAACGTTTGATTTTTGCTGGCAAA 108234 Query 24848 CAGCTGGA 24855 || || || Sbjct 108233 CAACTTGA 108226 >seq318 Length=230163 Score = 93.3 bits (102), Expect = 4e-14 Identities = 224/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 138700 TTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTAT 138759 |||||||| |||||||| || | ||| | | || | ||| || || | | ||| Sbjct 43767 TTCCACATGTCGTACTGGAAGAGTCCTTTAGAGACCGGGCAGCCCTCATAAGTCTGATAT 43708 Query 138760 ACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCG 138819 || |||| || ||| | ||| ||| ||||| | || ||||||||||| || ||| Sbjct 43707 GGTCCCAACTTTTCCGCTATCTCACAGCTGGCCTCCAAAGCTCCATAGTAAATGGTCTCG 43648 Query 138820 GCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTG 138879 ||||||| || || | ||||||| | ||| || | || ||| | || || Sbjct 43647 AAGATCTGCTTGTTAAGGAGCTGGGCCTCTGGGCTTTCAAATGGGTAGCGCATCAAGATG 43588 Query 138880 AACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCT 138939 || |||||||| | || ||||| || | || | ||||| || |||| ||| || Sbjct 43587 AAGGCGTCGGCTAAGCCCTGCACTCCAATGCCAATTGGGCGGTGACGCATATTGGA---G 43531 Query 138940 TTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACG 138996 || ||| || || || || || || ||||||||||| ||||| | || || | Sbjct 43530 TTACGGGCCTCGGGGACGGGGTAGTAATTGACATCGATGATCTTGTTAAGGTTCCGAGTG 43471 Query 138997 ACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTA 139034 || ||||| |||| | ||| || || |||| ||||| Sbjct 43470 ACGACCTTTGTCGCAGCCTTCAAACGCGCAAAGTCGTA 43433 >seq230 Length=975444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126028 ATGGTCGCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAttttt 126087 || |||||||||||| ||| ||||| | || || || || || ||||| || ||||| Sbjct 389927 ATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCATTTTC 389986 Query 126088 tttATAAAGACAAAGGGTATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGT 126147 | | |||| || | |||||||| | || ||||||||||| ||||| || | Sbjct 389987 TGGCTGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAACGAATTGATCTCCAGA 390046 Query 126148 GACGAAGGACTCCATACGGACTTTGCATG 126176 |||||||| | ||||||||||||||||| Sbjct 390047 GACGAAGGTTTGCATACGGACTTTGCATG 390075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449871584671280