Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq282 89.7 4e-13 seq243 82.4 6e-11 >seq282 Length=398316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| |||||||| ||| | |||||||| ||||||||| |||| ||| | Sbjct 140779 AAAATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCC 140720 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || || || || ||||| || ||| | ||| ||| Sbjct 140719 TCCGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGAT 140660 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | | || | ||| || || || ||||| |||| | || || |||||| Sbjct 140659 CAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTAC 140600 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| || ||||| ||||| |||| Sbjct 140599 AACATCCAAAAGGAGTCTACATTGCATTTGGT 140568 >seq243 Length=773012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || || || ||||||||| |||| |||||| | Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || || ||||| || || || || | || || || Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | |||| || || ||||| || ||||||| | | || || || |||||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAAC 552162 Query 110453 ATTCAAAAAG 110462 |||||||||| Sbjct 552163 ATTCAAAAAG 552172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412818324248618