Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq231 168 1e-35 seq230 125 1e-22 seq253 111 2e-18 >seq231 Length=939256 Score = 168 bits (186), Expect = 1e-35 Identities = 182/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||||| || ||| | | Sbjct 579178 TGTACTTGGTGACGGCCTTGGTTCCTTCAGAGACGGCGTGCTTGGCCAACTCTCCGGGGA 579119 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| ||||||||||| | | ||| ||| | |||||| | Sbjct 579118 GGAGGAGCCTGACGGCGGTTTGGATCTCGCGAGAGGTGATGGTGGACCTCTTGTTGTAGT 579059 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| | |||| || |||| || |||||||| || ||||||| Sbjct 579058 GAGCCAAACGGGAAGCCTCGGCGGCGATACGTTCGAAGATATCGTTGACGAAAGAGTTCA 578999 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||| |||||||| | |||||||| Sbjct 578998 TGATGCTCATGGCCTTGGAGGAGATTCCGGTGTCGGGGTGAACCTGCTTCAACACCTTGT 578939 Query 1485710 A 1485710 | Sbjct 578938 A 578938 >seq230 Length=975444 Score = 125 bits (138), Expect = 1e-22 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| || || |||||||| |||||| ||| ||| | | Sbjct 342872 TGTACTTGGTGACGGCCTTGGTACCTTCAGAAACGGCGTGTTTGGCCAATTCACCGGGGA 342931 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||||||| || | | ||| ||| | |||||| | Sbjct 342932 GGAGGAGCCTGACGGCGGTTTGGATCTCCCGAGAGGTGATGGTGGATCTCTTGTTGTAGT 342991 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| | |||| | |||| || |||| || |||||||| || ||||||| Sbjct 342992 GGGCCAAGCGGGAAGATTCGGCGGCGATACGTTCGAAGATATCGTTGACGAAAGAGTTCA 343051 Query 1485650 TGAT 1485653 |||| Sbjct 343052 TGAT 343055 Score = 98.7 bits (108), Expect = 2e-14 Identities = 216/319 (68%), Gaps = 11/319 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| | ||||||||||||||| || | |||||||| | || ||||| Sbjct 390055 ACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGCATCAATCCTCGCTT 389996 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || ||||| || || || || || || || || ||||| | || || Sbjct 389995 CTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTCCTTCGACTGAAGCGAA 389936 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCC 794517 |||| | | || ||| | | | || | | | |||||||| |||| |||| Sbjct 389935 AGCGACAATTCTTTCTGCATAGG-----AAGCGTTATCCGCATTGATCCAGTTCAACGCC 389881 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGT--CCT 794575 || | ||||| ||| || | ||||| || || || ||| ||||||| || | | Sbjct 389880 CATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTTGAAGAGGTTGTGGCGT 389821 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || || | || || |||| |||||| || |||||||| ||| || || || |||| Sbjct 389820 TC-CG-CGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTAAGTTTCGCTATGAATGT 389763 Query 794636 TTTCGATGGCGATCTGGAA 794654 |||| || |||| ||| || Sbjct 389762 TTTCCATAGCGACCTGAAA 389744 Score = 96.9 bits (106), Expect = 5e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| || |||||||| || | ||| || || | |||||| | | | ||||||||| Sbjct 389630 AAAGCATCTGGCCTCAGGAATTTGAACTTCTTGCATGAACCTTTCAACAAGGTTCTCATT 389571 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 || ||||||||| |||||| || ||||| | |||||||||||| ||||| ||||| Sbjct 389570 GACAATGCCGTCGGAGGCGGCAAAGAAGGCTAAGACGTGCTTGATGAAGTGCTTTTCGTC 389511 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 ||| | | | | |||| | || ||| | | ||| | |||||||| ||||| Sbjct 389510 GTCCTTCAACTTGGCCCAATCTGCCAAGTCCATGGACAAGTCAATTTCCTCGGCAGTCCA 389451 Query 796320 AAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT 796355 ||| |||| ||| || |||||||| | ||| || Sbjct 389450 GAAGCTGGCCATGGCTTTCTTGTACATTTTCCAGAT 389415 >seq253 Length=605553 Score = 111 bits (122), Expect = 2e-18 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || ||||||||| | |||| ||| ||| ||| Sbjct 199519 TGTACTTGGTGACAGCCTTGGTGCCTTCAGACACGGCGTGCTTAGCCAATTCACCGGGCA 199460 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | |||||||| |||||||| |||| | ||| ||| | |||||| | Sbjct 199459 ACAAAAGCCTGACGGCGGTTTGGATCTCCCGGGAGGTGATGGTGGACCTCTTGTTGTAGT 199400 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | |||| || |||| || |||||||| || ||||||| Sbjct 199399 GGGCCAAACGGGAAGCTTCAGCAGCGATACGTTCGAAGATATCGTTGACGAAAGAGTTCA 199340 Query 1485650 TGAT 1485653 |||| Sbjct 199339 TGAT 199336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915754311280814