Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq275 143 2e-29 seq282 116 2e-21 seq285 89.7 3e-13 >seq275 Length=453286 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| |||| ||||| ||||| ||| |||||||| || || ||||| || Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| |||| |||||| || || ||||||| |||||||||||| | || Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || ||||| | | || | ||| | ||| || Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACC 384704 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||||||||| || | || ||||| ||||||||||| Sbjct 384705 TCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || ||||||||| ||||| ||||| || || | ||| |||| ||| Sbjct 384315 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCATCCTCC 384374 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | |||||| || |||||||||| |||||||| ||| | || | ||||||||||| | Sbjct 384375 AATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 384434 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | || | ||| || |||| ||| || ||||| Sbjct 384435 ATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATCGTCTTA 384494 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||||| || ||||| |||||| Sbjct 384495 CCAGTCAAAGTCTTAACGAAGATTTGCATG 384524 >seq282 Length=398316 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || || ||| | || |||| ||||||||||| || || || Sbjct 140585 CTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 140644 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| |||||||| ||| | || | ||||||||||| | ||||| |||||| Sbjct 140645 GATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTT 140704 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || |||||| || || | ||| |||||||| || ||||| ||||| || Sbjct 140705 TTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGAC 140764 Query 34966 AAAGATCTGCAT 34977 |||||| ||||| Sbjct 140765 AAAGATTTGCAT 140776 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||| || ||||| | || || || |||| || || || |||||||||||||| || Sbjct 140321 TCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 140380 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 | |||| |||| || ||||| |||||||| || |||| ||||| || ||| | || Sbjct 140381 CAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGG 140440 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||| ||||| | || || || ||| | || | || ||| || || Sbjct 140441 AATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCAC 140500 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || ||||| || || |||||||| |||||||| ||||| Sbjct 140501 CTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq285 Length=381527 Score = 89.7 bits (98), Expect = 3e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 34819 CTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTC 34878 ||| || |||| |||||| || || ||||||| |||||||| ||| | || | ||||| Sbjct 34477 CTCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTC 34418 Query 34879 CTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGT 34938 |||||| | || || ||||| | | || | ||| || ||| || || | ||| Sbjct 34417 CTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGT 34358 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| || || || |||||||| Sbjct 34357 GATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCAT 34319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325674437643494