Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq282 125 7e-24 seq275 95.1 1e-14 >seq282 Length=398316 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| ||||| | |||||| || ||||| ||||||||||||||| Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| ||||| || |||||| |||||| |||||||||||| || || Sbjct 140610 AGGGTACGTCCA-TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 140668 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| ||||| || | | ||| | ||||| | || || || Sbjct 140669 AATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAAC 140728 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||| | || || || || |||||||| Sbjct 140729 CTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || |||| ||||| | || | ||||| || ||||||||||| ||||| || || Sbjct 140319 TGTCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCT 140378 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || ||||| |||||||||||||| || ||| | |||| |||||| ||||| ||| Sbjct 140379 GACAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGA 140438 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || || |||||||| || || || | | || | ||||| | || ||| Sbjct 140439 GGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCC 140498 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | || | ||||||||| |||| || || || || ||||||||| Sbjct 140499 ACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 140549 >seq275 Length=453286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 ||||| || || | |||||| || || |||| ||||| || || || |||||||| || Sbjct 384294 TGGCCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCT 384353 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | || | | || || | ||| || ||||| |||||| |||||||||||| || Sbjct 384354 GAGAGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGG 384413 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || ||||| || ||||| || || || | | ||| | || || | || || Sbjct 384414 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCA 384473 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || |||| || | |||||| || ||||| || || ||||| |||||||| Sbjct 384474 ACCTCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488515749943200