Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq239 86.0 7e-12 >seq239 Length=840022 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 106829 ATGATTATTTGTTCTTGGAATGTAGCTCAGCTGAATCAAATGGCGCTTCCACCTTGTCAT 106888 || || || ||| ||||||| || | |||| ||||||| | |||||||||||| Sbjct 248021 ATCATCATGTGTGCTTGGAACCCGACTGACCTGAGCAAAATGGCTTTGCCACCTTGTCAT 247962 Query 106889 TGTCTTGTCCAATTCTATGTGCGCAACAATACCCATCTAGATTGCCAGTTGTACCAAAGA 106948 ||||||| ||||| || ||| || |||| | || ||||| |||||||||||| Sbjct 247961 TGTCTTGCTCAATTTTACGTG-GC--CAATGGTGAGCTCAGCTGCCAATTGTACCAAAGA 247905 Query 106949 TCCGCCGATATTGGGCTCGGAGTCCCGTTCAACATCGC 106986 ||||| ||||| || | || || || |||||||| || Sbjct 247904 TCCGCTGATATGGGATTAGGTGTACCTTTCAACATTGC 247867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521515441625680