Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq282 161 2e-34 seq275 150 4e-31 seq245 120 6e-22 seq243 118 2e-21 seq285 113 9e-20 >seq282 Length=398316 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| || || | || ||||| |||||||| || || ||||| || || Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| ||||||||||| ||||| || | | ||||||||||||||| Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || ||||| ||||| || || || || ||||| || || | ||| || Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACC 140501 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||| ||||| ||||| || ||||| Sbjct 140502 TCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || |||| ||||| || || || || || ||||| Sbjct 140548 TACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGC 140607 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || ||||| ||||| || ||||||||||| | | ||| |||||||| | Sbjct 140608 TCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGG 140667 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| || || || || || ||||| || || || | || | Sbjct 140668 GAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAA 140727 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || | || || |||||||| || | ||||| ||||| || |||||| || Sbjct 140728 CCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTTT 140780 >seq275 Length=453286 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | || || ||||| || |||||||| ||||| ||||| || ||||| Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | ||| || ||||||||||| | | ||| || ||||| || Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || |||||||| || |||||| ||| || || Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACC 384704 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || || || ||||| || ||||||||| Sbjct 384705 TCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| |||||||| || ||||| || || || || || ||| | | || Sbjct 384308 ACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCC 384367 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| || ||||| ||||| | | ||| |||||||| || || || ||||| Sbjct 384368 ATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTT 384427 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || ||||||||||| ||||| || || || || | || || Sbjct 384428 GTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGAT 384487 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||||| ||||| || || || ||||| Sbjct 384488 CGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 >seq245 Length=708296 Score = 120 bits (132), Expect = 6e-22 Identities = 208/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 143985 GATCCAGTCTTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTA 144044 || ||||| | || || || || || | |||||||||||||||||| || || || ||| Sbjct 317919 GACCCAGTGCTCCACATTGACCTCAGAAAATGGGCTGATGTTTTTATCATCGCTCCATTA 317860 Query 144045 ACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATA 144104 || |||||||| ||||| | |||||| || |||||||| |||| | ||| Sbjct 317859 GATGCCAATACGTTGGCAAAGCTCAGCAATGGCTTAGCGGATAATTTGTTAACGTGCATA 317800 Query 144105 GTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGC-CCCGCTATGAATACCCTTAT 144163 | |||| |||||| | || ||||| | | |||||||| || |||||||| ||| | || Sbjct 317799 GCCCGAGCTTGGGATTTCAAGAAACC-CATCTTTTTTGCACCTGCTATGAACACCTTCAT 317741 Query 144164 GTGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCATAGA 144223 |||||| || ||| | || || | |||| | |||||| | ||| | ||| || Sbjct 317740 GTGGGATCACCCTGTGACCGATACTCATACCAAACAATTAAAAGAATGGGGATACATTGA 317681 Query 144224 AATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGCAGA 144283 ||| || || |||||| ||| ||| ||| |||||| || || ||||| || Sbjct 317680 AATTCCTTGCATTGAAAAAGTGCTAATGTGTAATGACAAAGGAAAGGGAGCCATGGCTGA 317621 >seq243 Length=773012 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||||||||||| || || || | ||||| || |||||||| ||||| ||| Sbjct 552140 CCATCCTCGAGTTGTTTTCCGGCGAAAATCAACCTTTGCTGGTCTGGAGGAATTCCCTCC 552081 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || || |||||||| || ||||| ||| ||||| || | || Sbjct 552080 TTATCCTGGATCTTGGCCTTGACATTTTCGATAGTATCGGAAGGCTCTACCTCGAGGGTA 552021 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| || || || || |||||||| Sbjct 552020 ATGGTCTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 551983 >seq285 Length=381527 Score = 113 bits (124), Expect = 9e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 82645 GAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA 82704 |||||| | ||||| | ||| || ||||||||||| | | ||| ||||||||||| | Sbjct 34484 GAATTCCCTCCTCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAA 34425 Query 82705 TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTT 82764 |||| ||||| ||||| ||||| || || ||||||||||| || ||| || || || | Sbjct 34424 TTCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCT 34365 Query 82765 CCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | | || || || ||||| || | || || || || ||||||||| Sbjct 34364 CGAGGGTGATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATT 34318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981769006488214