Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq285 111 2e-19 seq243 107 2e-18 seq318 105 6e-18 seq275 96.9 3e-15 seq230 96.9 3e-15 >seq285 Length=381527 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | || ||||| || ||||| || || |||||||| |||| Sbjct 34464 TGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATC 34405 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | ||||||||| |||| ||||| ||||||||| Sbjct 34404 TTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATGGTTTTGCCC 34345 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 34344 GTGAGGGTTTTGACGAAAATCTGCAT 34319 >seq243 Length=773012 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||| || || ||||| || | || ||| | | | |||||||| || || || ||| || Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCA-TCCTCGAGTTGTTTTCCGGCGAAA 552114 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || | || |||||||| ||||| || || ||||| || |||||| ||||| | Sbjct 552113 ATCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTT 552054 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || |||| ||||| || |||| ||| | ||| || || |||| |||||| ||| Sbjct 552053 TCGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACG 551994 Query 133650 AAAATCTGCATGG 133662 ||||||||||||| Sbjct 551993 AAAATCTGCATGG 551981 >seq318 Length=230163 Score = 105 bits (116), Expect = 6e-18 Identities = 189/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 149497 TCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGG 149556 ||||||||| |||||||| | | | |||||| | || |||| |||||||| Sbjct 41777 TCATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGG 41718 Query 149557 TGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGT 149616 | || ||||| || || ||||| |||||| | || | || | | | Sbjct 41717 TAGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCAT 41658 Query 149617 CCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCG 149676 | || || |||||||| ||||| | |||||| | ||||||||||||||| || || ||| Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 149677 CCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACT 149736 | |||||| | || |||||||| || | || | || ||| |||||||||| | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 149737 TGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGT 149772 |||| ||||||||| ||| | ||||||||| || Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAATGGCGGAGT 41502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/351 (66%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 |||||| || | ||| |||||||||||||| | ||| || || ||| || || ||| Sbjct 42789 CTCATCAGGCGAGCTATACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCC 42730 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || |||| || ||| ||||| |||||| ||||||||||| ||||| || || || Sbjct 42729 CAAATTCTGCTGGTTGGACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACC 42670 Query 148970 AGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTTGCTGC 149027 ||| || | ||||| || | ||| | || | | || || || ||||||| Sbjct 42669 AGTCTCAATCTGCGACTCAATGATGGCAGCCCA--AACCTCTTGAGCCTTGACTTGCTTG 42612 Query 149028 TCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAA 149087 | | || || ||||||| |||| | ||| || | ||||| |||| Sbjct 42611 CGGAATTTGCCTTCAGCCTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAG 42552 Query 149088 TCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACG 149147 ||| | | || || |||| || || |||||||| ||||| ||| | | ||| Sbjct 42551 TCGGCCAATCCCGGACACTCATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGACG 42492 Query 149148 CGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 149198 || ||||| || | ||||| | ||||||| | | | |||||| || ||| Sbjct 42491 CGTTTCATGAATAAGTCGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCC 42441 >seq275 Length=453286 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| |||||||| || | ||| | | | ||||| | Sbjct 384546 AAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCA-TCCTCCAA 384604 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || | || |||||||| || || ||||| |||||||| ||| Sbjct 384605 TTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGAT 384664 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | || || | ||||| || |||| ||||| ||| || || Sbjct 384665 CTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATGGTCTTTCC 384724 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | |||||||||||| |||||||| Sbjct 384725 AGTTAAAGTTTTTACGAAGATCTGCAT 384751 >seq230 Length=975444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 271/411 (66%), Gaps = 9/411 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| || || |||||||||||||||||||| |||||||| || | |||||||| | ||| Sbjct 390361 GTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCTCCAT 390302 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGG--CCCAACTGTACGAGCAGT 120471 || || || || || |||| | || | || || | || | |||| | Sbjct 390301 GAAGTCAAAAGGATTTTCAACGTTGTACACCTT--GTTGCATCCGAGCTCAAGAAGCAAT 390244 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAA-CGC 120530 ||||| || ||| ||| ||||||| ||| | | | |||||||| | | || Sbjct 390243 CGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAGTCGA 390184 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || || || || | ||||| | ||||| ||||| || || | || Sbjct 390183 CAA-GGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGATTTG 390125 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650 | || | | ||| || ||||| | | | || | ||| || ||| ||||| Sbjct 390124 CAAAATCCTCTTTTCGGACAACTTGTTGACCAAGTGCTT---GTACATCAAGCATGCAAA 390068 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 |||||| |||| || ||||| | || |||| |||||||| || |||| |||||||| Sbjct 390067 GTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGCAT 390008 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 | ||| | |||| | |||| |||||||||||||| || |||||||| Sbjct 390007 CAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAA 389957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483392846192240