Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq318 138 3e-27 seq230 131 4e-25 seq233 84.2 5e-11 >seq318 Length=230163 Score = 138 bits (152), Expect = 3e-27 Identities = 266/387 (69%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || || ||||| | ||||| ||||| | ||||| || || ||||| || || || ||| Sbjct 42358 TTCGCCATCTACTTGGAACCGTGGCACGCGGATATCTTCGATTTCTTGGATCTCCGCAAA 42417 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 || || ||| || ||||| || || ||||| | || | || | |||||| | || Sbjct 42418 AACCACGGAAAGGAGGAACAGAGGGCTCGTGACCTCTTCTTTGGGCTCTGGATTCCCGAC 42477 Query 110877 TTATTCATGAAACGTGTTCAAGAAAAT-GGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 |||||||||||||| | ||||| || | || |||||| || |||||||| ||| | Sbjct 42478 TTATTCATGAAACGCG-TCAAGGAATTCGGAATGTGGAGCCTCATGTGTCCCCATGAGTG 42536 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA-AGACCTTTACGAAAAATATGAAA 110994 ||| || | | || | || |||| ||||| ||| | ||||| ||||| || Sbjct 42537 TCCGGGATTGGCCGACTGCTGGGGCGAAGACTTTGAGAGA-TTGTACGAGAAATACGAGG 42595 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 |||||||| || ||||| ||| | |||||||| ||||| ||| |||| | Sbjct 42596 CTGAAGGCAAATTCCGCAAGCAAGTCAAGGCTCAAGAGGTTTGGGCTGCCATCATTGAGT 42655 Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTA 111114 | || |||| ||||| ||||||||||| | || || || | || ||||| || | Sbjct 42656 CGCAGATTGAGACTGGTACTCCTTATATGCTCTACAAGGACGCTTGCAACCGCAAGTCCA 42715 Query 111115 ATCAAATGAATTTAGGAACAATTAAGT 111141 | || |||||| || || ||||||| Sbjct 42716 ACCAGCAGAATTTGGGCACCATTAAGT 42742 >seq230 Length=975444 Score = 131 bits (144), Expect = 4e-25 Identities = 326/490 (67%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT 131848 ||||| || | ||||| || ||||||| | || ||||| | | ||| |||| Sbjct 389855 CCTGCCGTTCAGAAGAAGGCCAAATGGGCGTTGAACTGGATCAATGCGGATAACGCTTCC 389914 Query 131849 TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTT 131907 | | | |||| |||| ||||| |||| || ||||| || |||||||| || ||||| Sbjct 389915 TATGCAGAAAGAATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTT 389974 Query 131908 CTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCA 131967 || || || ||||| |||||||| ||||||||||| ||| | | || ||| | Sbjct 389975 GCC-GCCATTTTCTGGCTGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAACGA 390033 Query 131968 ATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATT 132027 ||| ||||| ||||| |||| |||||||| || ||||| || || || | | | | Sbjct 390034 ATTGATCTCCAGAGACGAAGGTTTGCATACGGACTTTGCATGCTTGATGTACA-AGCACT 390092 Query 132028 TGCTGATAAACTTG-ATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCG 132086 || | | || ||| ||||| | ||| ||| | | ||||||| || ||||| | Sbjct 390093 TGGTCAACAAGTTGTCCGAAAAGAGGATTTTGCAAATCGTTTGCGAAGCCGTGGATATTG 390152 Query 132087 AGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTA 132146 | | ||||| | || ||||| || ||||| | ||||| ||||||| |||| | Sbjct 390153 AAATTGAGTTCCTGACTGAAGCCTTACCTTGTCGACTCATTGGCATGAATGGCGACTTGA 390212 Query 132147 TGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGA 132206 || ||||||| | | || ||||| || || || | || |||| |||| Sbjct 390213 TGGCTCAGTACATCAAGTATGTCGCTGACCGATTGCTTCTTGAGCTCGGATGCAACAAGG 390272 Query 132207 TTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGA 132266 | || ||| |||| || | | | |||||| ||||| ||||| || ||||| | Sbjct 390273 TGTACAACGTTGAAAATCCTTTTGACTTCATGGAGAACATTTCTCTTGATGGCAAAACCA 390332 Query 132267 ACTTCTTCGA 132276 |||| || || Sbjct 390333 ACTTTTTTGA 390342 >seq233 Length=917343 Score = 84.2 bits (92), Expect = 5e-11 Identities = 178/260 (68%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTA--TGCAGGCAT 304943 || || | |||| | || ||||| | || |||| ||| |||| ||| | ||| || Sbjct 515328 TTGCAGTTTCATGTGGCCACATTGAGTGACAATGCAATGCCTGGT-TTACCTACAGCTAT 515270 Query 304944 CTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 |||| ||| || ||||| ||||| || | | ||| | ||||| || || |||| Sbjct 515269 G-CAAAAATCCGGACGACCTCTAAAGTCCATCAAGGCCCGCTTGAAAGGCAAGGAAGGTC 515211 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACAC 305063 ||||||| ||||| | ||||| |||||||| |||||| ||| ||| || || |||| Sbjct 515210 GTATTCGTGGTAACTTGATGGGCAAACGTGTGGATTTTTCTGCCCGAACCGTCATTACAC 515151 Query 305064 CTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACT 305121 ||||| | | |||| || || || | || || || | ||| |||||| ||| | Sbjct 515150 CTGATCCCAACCTTAGGATTGATCAAGTTGGTGTCCCCA--GAAGCATTGCTCAAAACTT 515093 Query 305122 AACATTTCCAGAGAAAGTTA 305141 || ||||| || | |||| Sbjct 515092 GACTTTTCCCGAAATCGTTA 515073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186742456863586