Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq282 118 7e-22 >seq282 Length=398316 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | || | ||| ||||| |||||||| ||||| || || || Sbjct 140322 CCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGAC 140381 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | |||||||||||||||||||||||| || |||||| | || Sbjct 140382 AATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGA 140441 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || ||| || | || | |||||| | |||||| Sbjct 140442 ATTCCCTCTTTGTCTTGGATCTTGGCCTTC-ACGTTCTCAATTGTGTCGGAGGCTTCCAC 140500 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || ||||| || || || | || || |||||||| |||||| Sbjct 140501 CTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 140549 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || ||| ||||| |||||||||||| Sbjct 140549 ACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCT 140608 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || |||| ||| || || ||||| |||||||| ||||||||| | || Sbjct 140609 CAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 140668 Query 33642 CACACCTTCTTTGTC 33656 | || || ||||| Sbjct 140669 AATGCCCTCCTTGTC 140683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685467873920