Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq243 102 8e-17 seq230 102 8e-17 seq282 87.8 2e-12 seq275 84.2 2e-11 >seq243 Length=773012 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||||||||||||||| |||| || || ||| ||||| ||||| |||| | | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | | || || |||||||| || || || ||||| || || || | | || Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||||| ||||| || |||| || | || ||||| |||| |||||| | || Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 132114 AAATCTGCATG 132124 ||||||||||| Sbjct 551992 AAATCTGCATG 551982 >seq230 Length=975444 Score = 102 bits (112), Expect = 8e-17 Identities = 337/516 (65%), Gaps = 11/516 (2%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 ||||| ||||| || |||||| | ||||| |||| |||||| | || | ||| Sbjct 389852 GTGCCTGCCGTTCAGAAGAAGGCCAAATGGGCGTTGAACTGGATCAATGCGGATAACGCT 389911 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 | || || | || || || ||||| ||||||||| | || ||||| || || Sbjct 389912 TCCTATGCAGAAAGAATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGC 389971 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 |||||||||||||| | | || | ||| | ||||| || |||| ||||| ||| Sbjct 389972 TTTGCCGCCATTTTCTGGCTGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAAC 390031 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTAT-TACAAGAC 46996 || |||||||| | |||||||| | || ||||||||||| || || || ||||| Sbjct 390032 GAATTGATCTCCAGAGACGAAGGTTTGCATACGGACTTTGCATG-CTTGATGTACAA--- 390087 Query 46997 GCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056 || | || | || || | | | ||| || || || | || || ||| Sbjct 390088 GCACTTGGTCAACAAGTTGTCCGAAAAGAGGATTTTGCAAATCGTTTGCGAAGCCGTGGA 390147 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCC-CGTCGCCTTGCTGGGCATGAACGCAC 47115 || |||| ||||| | |||| || | || |||| | | | |||||||| | Sbjct 390148 TATTGAAATTGAGTTCCTGACTGAAGCCTTACCTTGTCGAC-TCATTGGCATGAATGGCG 390206 Query 47116 AGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGA--CA 47173 | | ||| | || || ||| ||| || || || || | | |||||||| || Sbjct 390207 ACTTGATGGCTCAGTACATCAAGTATGTCGCTGACCGATTGCTTCTTGAGCTCGGATGCA 390266 Query 47174 ACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233 || || | || | | ||||| ||||| || ||| | |||||||| || || || Sbjct 390267 AC--AAGGTGTACAACGTTGAAAATCCTTTTGACTTCATGGAGAACATTTCTCTTGATGG 390324 Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||||||||| ||||| |||||||| || || || || Sbjct 390325 CAAAACCAACTTTTTTGAGAAACGCGTTGGTGAATA 390360 >seq282 Length=398316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||||||||| ||||| || || || ||||||||| ||||| |||| Sbjct 140353 TTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCGG 140412 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || | ||| |||||||||||||| || || ||||| || || || |||| Sbjct 140413 CAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCA 140472 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| | ||||| || | || | ||| || |||||||| || | Sbjct 140473 CGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCT 140532 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 140533 TGACAAAGATTTGCAT 140548 >seq275 Length=453286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | ||||| || || ||||||||||| | |||||| | Sbjct 384309 CGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCA 384368 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | || || || | |||| | ||| || |||||||| || ||||| || || Sbjct 384369 TCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTG 384428 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | ||||||| |||||| || || | || | | Sbjct 384429 TCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATC 384488 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||||||||| ||| || | ||| || |||||| || Sbjct 384489 GTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATGCCT 384527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583639957360