Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq282 89.7 5e-13 seq243 84.2 2e-11 >seq282 Length=398316 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || |||| || | || || |||||| | Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || || || |||||||| || || || ||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 ||| | | |||| | ||| |||||||||||||||| | | ||||| || || | Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCA--GACTATA 140371 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 | |||||||||||||| || ||||| | || | | |||||||| ||| Sbjct 140370 ACATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGA 140321 >seq243 Length=773012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || ||||| || || || || | || || |||| || || | Sbjct 551979 CACCATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCC 552038 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||||||| | || || || || ||||| ||||| || || || || Sbjct 552039 TTCCGATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGA 552098 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||| | |||| || ||| ||||||||||| |||| | | | | || || || Sbjct 552099 CCAGCAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTA 552158 Query 25351 CAATATTCAAAAAG 25364 ||| |||||||||| Sbjct 552159 CAACATTCAAAAAG 552172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445068662416320