Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq239 129 7e-25 >seq239 Length=840022 Score = 129 bits (142), Expect = 7e-25 Identities = 341/513 (66%), Gaps = 6/513 (1%) Strand=Plus/Plus Query 146817 CTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTT 146876 ||| | ||| | |||||| | |||| || || |||| ||| | | | | ||| Sbjct 247653 CTCCATGGCCAGATCTTCAAACTTGAAGTCTTCAATGTTCTCAATCTTTCGCTTGATCAC 247712 Query 146877 GAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGGGCTCCACGTGGT 146935 ||||||||||| || | ||||| | || ||||| | |||| | || | |||| Sbjct 247713 AAGCTTGGGGAACGG-CTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCGTCGATATGGT 247771 Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995 | | |||||| || || || || ||||| || |||||||| || | ||| | ||||||| Sbjct 247772 TCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCA 247831 Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 | || || | ||| | || | || | || || |||||||| || || || | | Sbjct 247832 CATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATC 247891 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACT 147115 |||| || | || || ||||||| ||||| |||||| || | |||||||||||| | Sbjct 247892 CCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATT 247951 Query 147116 G-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCC 147174 | ||| || || || || |||| ||||| | |||||| | |||||||| || Sbjct 247952 GAGCA-AGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCA 248010 Query 147175 GAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGC 147234 | | | | ||||||| || || || ||||||| | || || ||| | | ||| Sbjct 248011 CACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGC 248070 Query 147235 TGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTG 147293 || ||||| || ||||| ||| | | | ||| ||| ||| || ||||| || Sbjct 248071 TGATCCACACCTTGGCCAGAGTAATCAG-CATGCATGTCTTGGTATTCCGCACCAAAATG 248129 Query 147294 CCTCCACTGGAAGCCGTACACTGGCCCCAGGTC 147326 | ||| ||||| ||||| || || || || || Sbjct 248130 ACGCCATTGGAATCCGTAAACAGGACCAAGATC 248162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583454259806400