Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq231 131 2e-24 seq230 104 3e-16 seq318 98.7 1e-14 seq253 95.1 2e-13 >seq231 Length=939256 Score = 131 bits (144), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| |||| ||| ||| |||| || Sbjct 578935 ATCTACAAGGTGTTGAAGCAGGTTCACCCCGACACCGGA-----ATC-TCCTCCAAGGCC 578988 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||| || |||| || |||| | ||||||| Sbjct 578989 ATGAGCATCATGAACTCTTTCGTCAACGATATCTTCGAACGTATCGCCGCCGAGGCTTCC 579048 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || ||||||| | ||| ||| | | ||||||||||| |||||||| Sbjct 579049 CGTTTGGCTCACTACAACAAGAGGTCCACCATCACCTCTCGCGAGATCCAAACCGCCGTC 579108 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | | ||| || |||||| |||||||||||| || || |||| Sbjct 579109 AGGCTCCTCCTCCCCGGAGAGTTGGCCAAGCACGCCGTCTCTGAAGGAACCA 579160 >seq230 Length=975444 Score = 104 bits (114), Expect = 3e-16 Identities = 220/321 (69%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 1456000 TTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 || ||| |||| || |||||||| || ||||| ||| ||||| || || |||||| Sbjct 389744 TTTCAGGTCGCTATGGAAAACATTCATAGCGAAACTTACAGTCTCCTCATTGATACCTAC 389803 Query 1456060 GTCAAGGACCCGGTCGAGAAGG--ACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGG 1456117 |||| || || | || ||| | || ||||||| ||| || || || ||||| | | Sbjct 389804 ATCAAAGATCCCG-CG-GAACGCCACAACCTCTTCAACGCAATTGAAACAGTGCCTGCCG 389861 Query 1456118 TGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG--GCCTCGACACTTT 1456175 | ||| |||||| | |||||| |||| |||||||| ||| || || || | Sbjct 389862 TTCAGAAGAAGGCCAAATGGGCGTTGAACTGGATCAATGCGGATAACGCTTC----CTAT 389917 Query 1456176 GCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC 1456234 || || | | |||| || || | ||||| || || || || || || || || | Sbjct 389918 GCAGAAAGAATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCC 389977 Query 1456235 GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATT 1456294 ||||| || ||||| |||||||| || | |||||||| || || ||||||||||| Sbjct 389978 GCCATTTTCTGGCTGAAGAAGCGAGGATTGATGCCCGGA-TTGACTTTCAGCAACGAATT 390036 Query 1456295 TATCAGTCGCGACGAAGTTTT 1456315 ||| | ||||||| ||| Sbjct 390037 GATCTCCAGAGACGAAGGTTT 390057 Score = 95.1 bits (104), Expect = 2e-13 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 724968 TCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCC 725027 |||||| ||||||||||| || |||||||| || |||| || |||| | |||| | Sbjct 343064 TCCATGAGCATCATGAACTCTTTCGTCAACGATATCTTCGAACGTATCGCCGCCGAATCT 343005 Query 725028 GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 ||| |||| | || ||||||| | ||| ||| | | || |||||||| |||||| Sbjct 343004 TCCCGCTTGGCCCACTACAACAAGAGATCCACCATCACCTCTCGGGAGATCCAAACCGCC 342945 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || || | | ||| ||| |||||| |||||||| || || || |||| Sbjct 342944 GTCAGGCTCCTCCTCCCCGGTGAATTGGCCAAACACGCCGTTTCTGAAGGTACCA 342890 >seq318 Length=230163 Score = 98.7 bits (108), Expect = 1e-14 Identities = 179/259 (69%), Gaps = 16/259 (6%) Strand=Plus/Plus Query 263158 GAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT--GCCCAA-- 263213 || ||| | ||| |||| ||||||| |||| ||| ||||| |||||| | ||| || Sbjct 44209 GAAGAGATCCCGGCCGAGATCAAGGCCCTCTACAAAACCGTCTGGGAGATCAGCCAAAAA 44268 Query 263214 -CCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGC 263272 ||| | | | ||| |||| ||||||| ||| | |||||||||||||||| Sbjct 44269 ACCGT-----CCTCAAGATGTCGGCTGACCGCGGAGCCTTTATCGACCAGAGCCAGTCAT 44323 Query 263273 TCAACCTGTACCTCGCCGACCCGA---CGGCCGAGAGCATCACGTCGATGCACGCCTATG 263329 | ||| || || |||||||||| | ||| || | | || |||||| ||| | Sbjct 44324 TGAACGTGCACATCGCCGACCCCAATTTTGCCAAG---CTGTCCTCTATGCACTTCTACG 44380 Query 263330 CGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACG 263389 |||| |||||||||||| || |||||||| || | ||| | |||| ||| | Sbjct 44381 GCTGGCAAGTCGGCCTCAAGACGGGAATGTACTACTTGAGGACCAAGGCCGCAGCCTCTG 44440 Query 263390 CCATTCAATTCACCGTCGA 263408 | ||||| ||||| ||||| Sbjct 44441 CAATTCAGTTCACTGTCGA 44459 >seq253 Length=605553 Score = 95.1 bits (104), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 724955 ATCCTCCAAC-AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCA 725013 ||||| | || ||| ||||| ||||||||||| || |||||||| || |||| || | Sbjct 199313 ATCCTACGACCAAGGCCATGAGCATCATGAACTCTTTCGTCAACGATATCTTCGAACGTA 199372 Query 725014 TCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCG 725073 ||| | || || || |||| | || ||||||| | ||| ||| | | || | Sbjct 199373 TCGCTGCTGAAGCTTCCCGTTTGGCCCACTACAACAAGAGGTCCACCATCACCTCCCGGG 199432 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 ||||||| |||||||| | || | ||| ||| ||| |||| | ||||||||| || | Sbjct 199433 AGATCCAAACCGCCGTCAGGCTTTTGTTGCCCGGTGAATTGGCTAAGCACGCCGTGTCTG 199492 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 199493 AAGGCACCA 199501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177365013797412