Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq282 109 5e-19 seq243 100 3e-16 >seq282 Length=398316 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || ||| ||||||||| |||||||||||| | Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||| ||||| || ||||| ||||| || ||||| || | ||| Sbjct 140610 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 140669 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||| || ||| | || | | |||||| | || ||| Sbjct 140670 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACC 140729 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | || || || || || || | ||| || ||||| || |||||| Sbjct 140730 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATT 140777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||| || || | ||| || || | || || || || || || ||||| Sbjct 140358 TCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAA 140417 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | ||||| | ||| ||||| |||||| ||||| | Sbjct 140418 ATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTC 140477 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | ||||||||||| || ||||| || || |||| || || ||| Sbjct 140478 TCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACA 140537 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 140538 AAGATTTGCAT 140548 >seq243 Length=773012 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||||||||| || ||| || || | || || || || || || || || ||| Sbjct 552170 TTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAATC 552111 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 |||| |||||||| | ||||| | |||||| ||| |||||| ||| | | || | Sbjct 552110 AACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCG 552051 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || ||| | || ||||| | || || || ||||||||||||||||| || || Sbjct 552050 ATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGAAA 551991 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 551990 ATCTGCAT 551983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450767532860080