Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq282 127 2e-24 seq275 114 1e-20 seq243 105 7e-18 seq230 95.1 1e-14 >seq282 Length=398316 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || |||||||| |||||||| |||| | ||| | || || || || ||||| Sbjct 140580 GTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCCAGTTGCTTGCCA 140639 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| |||||||| |||||||| || || ||||| || || ||||| ||||| ||| Sbjct 140640 GCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTG 140699 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | |||||||| | || || ||||| |||||||| || ||||| | ||| Sbjct 140700 ACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTC 140759 Query 134697 TTAACGAAAATTTGCATTTT 134716 || || || ||||||||||| Sbjct 140760 TTGACAAAGATTTGCATTTT 140779 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||| ||||| | || | || || || || || ||||| ||||||||||| ||||| | Sbjct 140321 TCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 140380 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| | || | || ||||| ||||| || |||||||||||||| || ||||| || | Sbjct 140381 CAATG-TGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAG 140439 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || ||||| ||||| || || || || || | ||||||||| | ||||| Sbjct 140440 GAATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCA 140499 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||||| || || || || | || || || || |||||||| Sbjct 140500 CCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq275 Length=453286 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | || ||| || | ||| || || |||||||| || || |||||||| Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | || ||||| ||||| |||||||| ||||| || || || Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | || || || | || || Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACC 384704 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || ||||||||||| ||||| || |||||| Sbjct 384705 TCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || || || ||||| || ||||||||||| | || | Sbjct 384306 AGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGC 384365 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || ||||| || || |||||||| |||||||| || || ||||| || Sbjct 384366 CCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCC 384425 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | || ||||||| || || || || || Sbjct 384426 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTG 384485 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| |||||||| |||||||| Sbjct 384486 ATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 >seq243 Length=773012 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 ||||||||||||||||| | | ||| | || ||||| ||||| || || |||||| Sbjct 552170 TTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAATC 552111 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 || | ||||| || || || || || || || || || || || ||||| || Sbjct 552110 AACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCG 552051 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | || ||||| | || || ||||| |||||||| ||||| || |||||||| |||||| Sbjct 552050 ATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGAAA 551991 Query 134706 ATTTGCAT 134713 || ||||| Sbjct 551990 ATCTGCAT 551983 >seq230 Length=975444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 277/417 (66%), Gaps = 15/417 (4%) Strand=Plus/Minus Query 21426 GTATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCAT 21485 |||||| || || ||| | ||||| || || ||||| || || || | |||||| | ||| Sbjct 390361 GTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCTCCAT 390302 Query 21486 AAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCA-CAAAC 21544 || | ||||||||| ||| | |||||| | | | | | || | | ||| | Sbjct 390301 GAAGTCAAAAGGATTTTCAACGTTGTA-CACCTTGTTGCATCCGAGCTCAAGAAGCAATC 390243 Query 21545 GATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGA 21604 | || || || | | ||||| ||| ||| ||||| ||||||||| | || |||| Sbjct 390242 GGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAG-TCGA 390184 Query 21605 CC-GGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCG 21663 | |||| ||||| || | ||||| | || ||| |||| ||||| | || | Sbjct 390183 CAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGATTT-G 390125 Query 21664 TGTATTTCACCGG-CGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGACA 21722 | | | | ||||||| |||| ||| | | || |||| || || Sbjct 390124 CAAAATCCTCTTTTCGGACAACTTGT--TGA----CCAAGTGCTTGTACATCAAG---CA 390074 Query 21723 AGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACC 21782 ||||| | || ||||| || ||||| | || ||||||||||||||||| || | || Sbjct 390073 TGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCC 390014 Query 21783 GGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaa 21839 |||||| || ||||| || || | | ||||| || |||||||| |||||||| || Sbjct 390013 GGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAA 389957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505369175337520