Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq230 176 6e-39 seq240 111 2e-19 seq318 109 8e-19 >seq230 Length=975444 Score = 176 bits (194), Expect = 6e-39 Identities = 459/694 (66%), Gaps = 21/694 (3%) Strand=Plus/Minus Query 39267 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC----TTG--TGACATAACTC 39320 || ||||||||||| | ||||| || || ||| || ||| | ||| |||| Sbjct 390431 TTTTTTAAAAGTCAGCTTCTAAGTTGAATTGGCGATCCTCAGCATTGGCCGTCATGACTC 390372 Query 39321 CCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA 39380 | |||||||||||||||||||||||||| ||||| || |||||||| || | || | Sbjct 390371 CTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAA 390312 Query 39381 TATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTG 39440 | || |||||||| ||||| ||||| | || || || || |||| | || Sbjct 390311 TGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCCGAGCTCAA 390252 Query 39441 AAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTA 39500 || ||||| || || ||| | | ||||| ||||| || | |||||| || | Sbjct 390251 GAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAA 390192 Query 39501 TGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTA 39560 ||||| | |||| || || || || ||||| |||| || || ||||| || Sbjct 390191 TGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTC----G 390136 Query 39561 TTATCGATGTTACTACCTCATC-ACTCGG-----TGGATGCAATAAATGTTTAAACATTA 39614 | |||| || | | || || |||| | | || | || || || |||| | Sbjct 390135 CAAACGAT-TTGCAAAATCCTCTTTTCGGACAACTTGTTG-ACCAAGTGCTTGTACATCA 390078 Query 39615 AGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 39674 |||| || ||||| ||| | || || ||||| || |||||||| || || | Sbjct 390077 AGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCA 390018 Query 39675 GTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGA 39734 ||| ||||| | || ||||| || ||||| || ||||| ||||| ||| ||||||| Sbjct 390017 ATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGA 389958 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---GTAACTTGTATCATTAT 39791 | || ||||| |||| || || || |||| ||| ||| | | || |||| || Sbjct 389957 AAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCCGCAT 389898 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| ||| ||||| | || ||||||| || ||||| |||||| || || | Sbjct 389897 TGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGT 389838 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | ||||| | || ||| | |||||| | || ||||| || | ||||| || Sbjct 389837 TGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTAAG 389778 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAA 39945 |||| ||| |||||||| || || | |||||| Sbjct 389777 TTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq240 Length=835721 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 163024 GAAGGGTTGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGCTT 163083 ||||| |||||| | |||||| | || | |||||||||||||| || ||| ||| | Sbjct 443488 GAAGGATTGGTTCTTAAAGATCTGAAAAGTATATACGAGCCAGGCAAGCGTCATTGGTTG 443547 Query 163084 AAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAGTA 163143 ||| | || ||||| ||||| || | ||| | ||||| || || || ||||| || || Sbjct 443548 AAAGTCAAAAAAGATTACTTACACGAGGGTGCTATGGCTGATTCGGCTGATTTGGTGGT- 443606 Query 163144 CTTGGG-GCATATTATGGAAAAGGAATAAAGGGTGGA---ATGATGGCTGTCTTTTTGAT 163199 |||||| |||| ||||| ||| |||| ||||| || ||| || | |||||||| Sbjct 443607 CTTGGGCGCATGGTATGGGTCAGG---AAAGCGTGGAAGTATCATGTCTATATTTTTGAT 443663 Query 163200 GGGTTG---CTATGATGACGAGTCTGGTAAATGGAAGACAGTAACTAAA 163245 ||| || | || | | | |||| |||||||| ||||| |||||| Sbjct 443664 GGGCTGTCTCGATAAGGCCAAGTC---GAAATGGAAAACAGTGACTAAA 443709 >seq318 Length=230163 Score = 109 bits (120), Expect = 8e-19 Identities = 272/413 (66%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 68788 CCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 68847 || |||||||||||||| || || || ||||| || |||| ||| | |||||| | Sbjct 43887 CCAAGAATTTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAACAAAAGGGAATTTCTGATG 43828 Query 68848 CCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACA 68907 ||||||| ||| ||| |||| || | | ||||| ||||| | || ||| Sbjct 43827 CCATGTGCCTTGACTTTGGCTTTGAGGTCATCCCAATTGTGTAGATCTGTGGGAGTGACA 43768 Query 68908 TTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAA 68967 ||||| | ||||| || | | ||| ||| | | || | ||| || | ||| Sbjct 43767 TTCCACATGTCGTACTGGAAGAGTCCTTTAGAGACCGGGCAGCCCTCATAAGTCTGATAT 43708 Query 68968 GGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCG 69027 ||||| || ||| |||| ||||| || ||||| || || || || ||||| || ||| Sbjct 43707 GGTCCCAACTTTTCCGCTATCTCACAGCTGGCCTCCAAAGCTCCATAGTAAATGGTCTCG 43648 Query 69028 AAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATA 69087 || |||| ||| || || || || ||| | || || ||||| || | | | || Sbjct 43647 AAGATCTGCTTGTTAAGGAGCTGGGCCTCTGGGCTTTCAAATGGGTAGCGCATCAAGATG 43588 Query 69088 AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT 69147 || || || || || ||||| || ||||| || || || | || | | |||| || | Sbjct 43587 AAGGCGTCGGCTAAGCCCTGCACTCCAATGCCAATTGGGCGGTGACGCATATTGGAGTTA 43528 Query 69148 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 || || || | || || ||||| | ||| || || || ||||| || || Sbjct 43527 CGGGCCTCGGGGACGGGGTAGTAATTGACATCGATGATCTTGTTAAGGTTCCG 43475 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 || || || ||||| || |||||| || | ||| || || ||||| || ||||| || Sbjct 41856 AGTCCAATACCTCCAGCAGATTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATG 41797 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990 |||| ||| ||| | ||||| | | ||||| || || || | ||| | | Sbjct 41796 TCCTCAATGGAATCCCCACTCATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGA 41737 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||| | ||||| || | |||||||| ||||||||||| ||| || || | || || Sbjct 41736 GTTGCGGCATTGAACATGGTAGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTA 41677 Query 70051 TATGTTTCAAT-AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || |||||||| | | | || ||||| |||||| || | ||||| | ||||| Sbjct 41676 TAAGTTTCAATGATATCA-TCGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAG 41618 Query 70110 CATATGCTGAGGTCGTTCTAC 70130 ||||||||| || ||||| || Sbjct 41617 CATATGCTGGGGCCGTTCCAC 41597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686869079498640