Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq239 210 2e-49 seq230 163 2e-35 >seq239 Length=840022 Score = 210 bits (232), Expect = 2e-49 Identities = 481/711 (68%), Gaps = 11/711 (2%) Strand=Plus/Minus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATC--AGTTTCCG-TTGCTAACT 40706 || ||||||||| ||||| | | |||| || | || | ||||| || | || Sbjct 248384 TCCATATTTGGAGCTCAAATGCGGTTCAATCTGCGTGATGGAATTTTCCCCTTATTGACA 248325 Query 40707 ACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGT 40766 || ||||||| |||||| |||||||||||||||||| || ||||| ||| |||| Sbjct 248324 ACCAAAAAAACCTTTTGGCGAGGCATTGCAGAAGAACTTTTTTGGTTCATCCGTGGTTCA 248265 Query 40767 ACTAATGCTAAGAAATTATCAGAAAGAGGA-GTGCACATTTGGAATGCGCACAGTTCTAA 40825 || |||| || |||| || |||| || | || | |||||| |||| | | || | Sbjct 248264 ACCAATGGCAATGAATTGTCTGAAA-AGAACGTCCGGATTTGGGATGCCAATGGATCAAG 248206 Query 40826 A-ACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTT 40884 | || | | | | |||| |||||| || | || | ||||||||||||||||| Sbjct 248205 AGACTTTCTGGACAAGCA-AGGATTGACTCATCGTGAAGTCAATGATCTTGGTCCTGTTT 248147 Query 40885 ATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCA 40944 | ||||| || | ||| |||||||| || |||| | ||| | ||||||| | Sbjct 248146 ACGGATTCCAATGGCGTCATTTTGGTGCGGAATACCAAGACATGCATGCTGATTACTCTG 248087 Query 40945 ATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCC 41004 |||| ||||||| | || || || || | ||||| | | || ||| | Sbjct 248086 GCCAAGGTGTGGATCAGCTCAAGGAGGTCATTGACAAAATTAAGAACAAGCCGGATGACA 248027 Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 | || || || |||| || |||||||| || ||| | ||||| |||||||||| Sbjct 248026 GGCGGATCATCATGTGTGCTTGGAACCCGACTGACCTGAGCAAAATGGCTTTGCCACCTT 247967 Query 41065 GTCATTTGTTATG-TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||| |||| || ||| |||||||| ||||||||| || || |||||||| ||| Sbjct 247966 GTCA-TTGTCTTGCTCAATTTTACGTGGCCAATGGTGAGCTCAGCTGCCAATTGTACCAA 247908 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 ||||| | ||| |||||| |||| || || || ||||| || |||||| || | || Sbjct 247907 AGATCCGCTGATATGGGATTAGGTGTACCTTTCAACATTGCATCTTATGCCCTTTTGACT 247848 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 |||||||||| || || ||| ||| || |||| || |||||||| || | || ||| Sbjct 247847 CATATGATTGCTCATGTGACCGGTTTGAAGACTGGAGACTTTGTTCATACCCTCGGCGAT 247788 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGA-ACAACTGACACGAAAACCTAG 41302 | ||| | ||| | || || || || | || | ||| || || ||| |||||| Sbjct 247787 GCTCATGTCTACTTGAACCATATCGACGCTTTGA-AGACTCAGCTTGAACGTGAACCTAA 247729 Query 41303 ACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTT 41353 || || || | ||| | || || || |||| |||||||| || || Sbjct 247728 GCCGTTCCCCAAGCTTGTGATCAAGCGAAAGATTGAGAACATTGAAGACTT 247678 >seq230 Length=975444 Score = 163 bits (180), Expect = 2e-35 Identities = 420/629 (67%), Gaps = 18/629 (3%) Strand=Plus/Plus Query 43952 TTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTAC 44011 ||||| | || || ||||| |||||| |||| |||||||| || || ||||| ||| Sbjct 389744 TTTCAGGTCGCTATGGAAAACATTCATAGCGAAACTTACAGTCTCCTCATTGATACCTAC 389803 Query 44012 ATCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGAT 44070 ||||||||| | || | || | | | || || || || |||||||| ||||| | Sbjct 389804 ATCAAAGATCC-CGCGGAACGCCACAACCTCTTCAACGCAATTGAAACAGTGCCTGCCGT 389862 Query 44071 TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA---TTCTTTTGGAGA 44127 | | | || || | ||||| | || ||||| ||| | || | ||| | || ||| Sbjct 389863 TCAGAAGAAGGCCAAATGGGCGTTGAACTGGATCAATGCGGATAACGCTTCCTATGCAGA 389922 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCAT 44187 | || ||||||| || || || ||||| ||||||||||| ||| ||||| ||||| Sbjct 389923 AAGAATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCAT 389982 Query 44188 ATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATA 44245 || ||| | ||||| ||||| |||||||| || ||||| ||||| || || || || Sbjct 389983 TTTCTGGCTGAAGAAGCGAGGATTGATGCCCGGATTGAC--TTTCAGCAACGAATTGATC 390040 Query 44246 AGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG--TTACTTGGATATCTAGGAG 44303 | || ||||| || ||| || ||||| |||||| ||| | | || | | Sbjct 390041 TCCAGAGACGAAGGTTTGCATACGGACTTTGCATGCTTGATGTACAAGCA---CTTG--G 390095 Query 44304 ACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAAC 44363 | | ||| || |||| ||| | || ||| || || || | || ||| Sbjct 390096 TCAACAAGTTGTCCGAAAAGAGGATTTTGCAAATCGTTTGCGAAGCCGTGGATATTGAAA 390155 Query 44364 AAGAATTTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAATGAACTTTTGATG 44422 || || |||| ||| ||||| ||| | | || || ||||||| |||||| Sbjct 390156 TTGAGTTCCTGACTGAAGCCTTACCTTGTCGA-CTCATTGGCATGAATGGCGACTTGATG 390214 Query 44423 AACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACAC 44482 || || || | || | || || || || ||| | || || || ||| | || Sbjct 390215 GCTCAGTACATCAAGTATGTCGCTGACCGATTGCTTCTTGAGCTCGGATGCAACAAGGTG 390274 Query 44483 TATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAAC 44542 || | || |||| || ||||| || ||||| || ||||| | || |||||||| ||| Sbjct 390275 TACAACGTTGAAAATCCTTTTGACTTCATGGAGAACATTTCTCTTGATGGCAAAACCAAC 390334 Query 44543 TTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||||||| ||||||||||| ||||| || Sbjct 390335 TTTTTTGAGAAACGCGTTGGTGAATACCA 390363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433591679130