Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq239 114 1e-20 >seq239 Length=840022 Score = 114 bits (126), Expect = 1e-20 Identities = 182/252 (72%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 31156 TCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTT 31215 ||||| || || | || | ||| |||||||| | | || || || || || | |||| Sbjct 247762 TCGATATGGTTCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAG-TCTT 247820 Query 31216 -AGATGGGTCAATTTGGCAATCACATGAACCAAAAGCGCATAACTCGCTATGTTGAATGG 31274 | | ||||| | ||||||| |||| |||||| |||||| || |||||||| || Sbjct 247821 CAAACCGGTCACATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGG 247880 Query 31275 TACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGGT 31334 |||||| ||||||| ||| || |||| ||| || || ||| || ||| | || Sbjct 247881 TACACCTAATCCCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGC 247940 Query 31335 CACGTAAAATTGA-AATAACACATGACAAGGCGGCAAAGCCATTT--CACAGGTATCGAC 31391 ||||||||||||| | ||| ||||||||| ||||||||||||| | ||||| | | Sbjct 247941 CACGTAAAATTGAGCAAGACA-ATGACAAGGTGGCAAAGCCATTTTGCTCAGGT-CAGTC 247998 Query 31392 GGGATTCCAAGC 31403 ||| |||||||| Sbjct 247999 GGG-TTCCAAGC 248009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512987934757280