Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq282 123 2e-23 >seq282 Length=398316 Score = 123 bits (136), Expect = 2e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27012 TAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATT 27070 || ||| || || || | ||| || | ||| | ||| | || || ||||||||||| || Sbjct 140312 TATTTAGTGTCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTT 140371 Query 27071 GTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130 ||||| || |||| | |||||||| ||||| ||||| |||| | ||| ||||| Sbjct 140372 ATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTG 140431 Query 27131 ATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT 27190 ||| || || | |||||||| || ||||||| |||| | | || | ||||| | Sbjct 140432 ATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGA 140491 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || || | || || | ||||| ||||| || || ||||||||||||||| Sbjct 140492 GGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 140549 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| || ||||| || ||||| || ||||| ||||||| | | || | ||||| Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || || | || | ||| || ||||| || || | ||||| || || | Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | |||| | ||||| | ||| ||||| || || || || | ||| Sbjct 140688 ATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTG 140747 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || |||||||||||||| Sbjct 140748 CCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910442464112